RnoEX0081862 @ rn6
Exon Skipping
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9994255-9995290:+
Coord C1 exon
chr9:9994255-9994407
Coord A exon
chr9:9994575-9994682
Coord C2 exon
chr9:9995123-9995290
Length
108 bp
Sequences
Splice sites
3' ss Seq
CAGCCATATTCCACCCTCAGATC
3' ss Score
7.12
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCATGCCTCAAAGTCCAACCGGCTCAACATCCTAGGGGGCCTGAGAAACATGGTTCAAGAAGGGGGCCTCTTGTCCCTCTGGCGGGGCAACGGCATCAACGTGCTCAAGATCGCCCCTGAGTCTGCCATTAAATTCATGGCTTATGAACAG
Seq A exon
ATCAAGCGGGCCATCTGCGGGCAGCAAGAGACACTGCACGTTCAGGAGCGCTTCGTGGCTGGCTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAG
Seq C2 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAGTACAAGGGGCTCCTGGACTGTGCAAGGCGAATCTTAGAGCGTGAAGGGCCACGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATTCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.8=100)
A:
PF0015322=Mito_carr=PD(8.6=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTAGGGGGCCTGAGAAAC
R:
CCAGCACATTAGGCAGGTAGC
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]