MmuEX0042862 @ mm9
Exon Skipping
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57192105-57193122:-
Coord C1 exon
chr17:57192970-57193122
Coord A exon
chr17:57192664-57192771
Coord C2 exon
chr17:57192105-57192272
Length
108 bp
Sequences
Splice sites
3' ss Seq
CAGCCATGTTATACCCTCAGATC
3' ss Score
6.96
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCACGCCTCAAAGTCCAACCGGCTTAACATTCTAGGGGGCCTGAGAAACATGATTCAAGAAGGGGGTGTCTTGTCCCTCTGGCGGGGCAACGGCATCAACGTGCTCAAGATAGCCCCCGAGTCTGCCATCAAATTCATGGCTTATGAACAG
Seq A exon
ATCAAGCGGGCCATCCGGGGGCAACAGGAGACACTGCACGTTCAGGAGCGCTTCGTGGCTGGTTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAG
Seq C2 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAATACAAGGGGCTCCTGGATTGTGCAAAGCGGATCTTAGAACGTGAAGGGCCCCGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATCCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.8=100)
A:
PF0015322=Mito_carr=PD(11.8=24.3),PF0015322=Mito_carr=PU(28.9=70.3)
C2:
PF0015322=Mito_carr=PU(81.0=97.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGGCCTGAGAAACATGAT
R:
CCAGCACATTAGGCAGGTAGC
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: