Special

MmuEX0042862 @ mm10

Exon Skipping

Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57052682-57053699:-
Coord C1 exon
chr17:57053547-57053699
Coord A exon
chr17:57053241-57053348
Coord C2 exon
chr17:57052682-57052849
Length
108 bp
Sequences
Splice sites
3' ss Seq
CAGCCATGTTATACCCTCAGATC
3' ss Score
6.96
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCACGCCTCAAAGTCCAACCGGCTTAACATTCTAGGGGGCCTGAGAAACATGATTCAAGAAGGGGGTGTCTTGTCCCTCTGGCGGGGCAACGGCATCAACGTGCTCAAGATAGCCCCCGAGTCTGCCATCAAATTCATGGCTTATGAACAG
Seq A exon
ATCAAGCGGGCCATCCGGGGGCAACAGGAGACACTGCACGTTCAGGAGCGCTTCGTGGCTGGTTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAG
Seq C2 exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAATACAAGGGGCTCCTGGATTGTGCAAAGCGGATCTTAGAACGTGAAGGGCCCCGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATCCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0015322=Mito_carr=FE(53.8=100)

							
A:
PF0015322=Mito_carr=PD(11.8=24.3),PF0015322=Mito_carr=PU(28.9=70.3)

							
C2:
PF0015322=Mito_carr=PU(81.0=97.9)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000040198





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000128348, ENSMUSP00000132169
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr19:6453981-6454088 
ALTERNATIVE
HsaEX0059038
(SLC25A23)
Human
(hg19)
chr19:6453992-6454099 
ALTERNATIVE
HsaEX0059038
(SLC25A23)
Rat
(rn6)
chr9:9994575-9994682 
ALTERNATIVE
RnoEX0081862
(Slc25a23)
Cow
(bosTau6)
chr11:98757520-98757627 
HIGH PSI
BtaEX0032885
(SLC25A25)
Cow
(bosTau6)
chr7:19253255-19253362 
HIGH PSI
BtaEX6038716
(SLC25A41)
Chicken
(galGal4)
chr17:4798736-4798843 
HIGH PSI
GgaEX1053083
(SLC25A25)
Chicken
(galGal3)
chr17:5433740-5433847 
HIGH PSI
GgaEX1053083
(F1NYW3_CHICK)
Zebrafish
(danRer10)
chr1:54306480-54306593 
HIGH PSI
DreEX0072296
(slc25a23a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGGGGGCCTGAGAAACATGAT

				
R: 
CCAGCACATTAGGCAGGTAGC

				
Band lengths: 
245-353

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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