BtaEX6038716 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020017 | SLC25A41
Description
Bos taurus solute carrier family 25, member 41 (SLC25A41), mRNA. [Source:RefSeq mRNA;Acc:NM_001075841]
Coordinates
chr7:19252528-19257329:+
Coord C1 exon
chr7:19252528-19252680
Coord A exon
chr7:19253255-19253362
Coord C2 exon
chr7:19257162-19257329
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTCCTCTTTCCCATTCCAGTGT
3' ss Score
9.98
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCTACTCCTCCAAGAAGAATTTCATGAATCTGCTGGGAGGTCTCCGGAGCCTGATCCAGGAAGGGGGCATCCGTTCACTCTGGAGGGGCAACGGTATCAATGTGCTCAAAATTGCCCCGGAGTACGCCATCAAGTTCTCTGTCTTCGAACAG
Seq A exon
TGTAAAAACTACTTCTGTGGAGTGCACGAGTCCCCACCCTTTCAGGAACGTCTCCTTGCTGGCTCTCTGGCTGTGGCCACTTCCCAGACGCTCATCAACCCTATGGAG
Seq C2 exon
GTGCTGAAGACGCGGCTGACCCTGCGGCGGACCGGCCAGTACAAGGGGCTGCTGGACTGCGCCAGGCAGATCCTGGAGCAGGAGGGCACCCGCGCCCTTTACCGTGGGTACCTCCCCAACATGCTTGGCATCATCCCGTATGCCTGCACCGACCTGGCCGTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020017-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAATCTGCTGGGAGGTCT
R:
CAAGCATGTTGGGGAGGTACC
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]