HsaEX6092259 @ hg19
Exon Skipping
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25, member 41 [Source:HGNC Symbol;Acc:28533]
Coordinates
chr19:6427345-6430172:-
Coord C1 exon
chr19:6430020-6430172
Coord A exon
chr19:6429735-6429842
Coord C2 exon
chr19:6427345-6427512
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTCTCCTCTCCCAGTGC
3' ss Score
11.43
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCTACTCCTCCAAGACGAACTTCACCAACCTGCTGGGGGGGCTACAGAGCATGGTCCAGGAGGGCGGCTTCCGCTCCCTGTGGCGGGGCAACGGCATCAACGTGCTCAAGATTGCTCCTGAGTATGCCATCAAGTTCTCCGTATTCGAGCAG
Seq A exon
TGCAAGAATTACTTCTGTGGAATACAAGGGTCCCCGCCCTTCCAGGAGCGTCTCCTTGCTGGCTCCCTGGCTGTGGCCATCTCCCAGACCCTCATCAACCCCATGGAG
Seq C2 exon
GTGCTGAAGACGCGGTTGACCTTGCGTCGGACGGGCCAGTACAAGGGGCTGCTGGACTGCGCCAGGCAGATCTTGCAGCGAGAGGGCACCCGCGCCCTTTACCGCGGCTACCTGCCCAATATGCTCGGCATCATCCCCTATGCCTGCACCGACCTGGCTGTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.123 C2=0.017
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.8=100)
A:
PF0015322=Mito_carr=PD(7.5=19.4),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAGCATGGTCCAGGAGG
R:
GCAGGCATAGGGGATGATGC
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)