GgaEX1053083 @ galGal3
Exon Skipping
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5433339-5434120:-
Coord C1 exon
chr17:5433968-5434120
Coord A exon
chr17:5433740-5433847
Coord C2 exon
chr17:5433339-5433506
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTCTGCCTTGGCTTCCACAGATC
3' ss Score
10.46
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTTCATGCCTCCCGCAGTAACAACATGTGTATCATTGGTGGTTTTACTCAAATGATCCGAGAGGGTGGAACAAGGTCACTGTGGAGGGGGAATGGCATCAACGTGCTGAAGATTGCACCAGAGTCTGCCATCAAGTTCATGGCTTATGAGCAG
Seq A exon
ATCAAGAGGTTCATTGGTACTGACCAGGAAATGCTGAGGATTCACGAGCGGCTGTTAGCTGGCTCTCTGGCTGGGGCCATCGCACAGAGCAGCATCTACCCGATGGAG
Seq C2 exon
GTTCTGAAAACACGGATGGCTCTGAGAAAGACAGGACAGTATTCAGGCATGTTGGATTGTGCCAAAAACATCCTTTCCAAGGAAGGAATGGCTGCCTTCTACAAAGGCTACATTCCCAACATGCTAGGAATCATTCCATATGCTGGGATTGACCTGGCAGTGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAACAAGGTCACTGTGG
R:
TACACTGCCAGGTCAATCCCA
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]