RnoEX0081874 @ rn6
Exon Skipping
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11444967-11445738:-
Coord C1 exon
chr3:11445586-11445738
Coord A exon
chr3:11445222-11445329
Coord C2 exon
chr3:11444967-11445134
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCCCTATTTTAGATG
3' ss Score
11.72
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCCATGCCTCCCGCAGCAACAACATGTGCATCATAGGTGGATTCACACAGATGATTCGAGAAGGGGGCGCCAAGTCCCTCTGGAGGGGCAATGGCATCAATGTCCTCAAAATTGCCCCTGAGTCAGCCATCAAGTTCATGGCATATGAGCAG
Seq A exon
ATGAAACGCCTTGTTGGTAGTGATCAGGAGACGCTGAGGATCCACGAAAGGCTAGTGGCAGGCTCCTTGGCTGGGGCCATTGCCCAGAGTAGCATCTACCCAATGGAG
Seq C2 exon
GTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGCCAGTACTCGGGAATGCTGGACTGTGCCAAGAGGATCCTGGCTAAAGAGGGTGTGGCTGCCTTCTATAAAGGCTACATCCCCAACATGCTGGGGATCATCCCGTATGCGGGCATCGATCTAGCTGTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338-'14-9,'14-8,15-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAACAACATGTGCATCA
R:
TATAGAAGGCAGCCACACCCT
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]