MmuEX6100558 @ mm9
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32272612-32273396:-
Coord C1 exon
chr2:32273244-32273396
Coord A exon
chr2:32272866-32272973
Coord C2 exon
chr2:32272612-32272779
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTTTTCCTATTTTAGATG
3' ss Score
11.94
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCCATGCCTCCCGCAGCAACAACATGTGCATCGTAGGTGGATTCACACAGATGATTCGAGAAGGGGGAGCCAAGTCACTCTGGCGGGGCAACGGCATCAATGTCCTCAAAATTGCCCCTGAGTCGGCCATCAAATTCATGGCATATGAGCAG
Seq A exon
ATGAAACGGCTTGTCGGTAGTGATCAGGAGACGCTGAGGATCCACGAAAGGCTTGTGGCAGGCTCCTTGGCCGGAGCCATTGCCCAGAGTAGCATCTACCCAATGGAG
Seq C2 exon
GTTCTGAAGACCCGAATGGCCCTGCGGAAAACAGGACAGTACTCCGGCATGCTGGACTGTGCCAGGAGGATCTTGGCTAAAGAGGGTGTAGCTGCCTTCTACAAAGGCTACATCCCCAACATGCTGGGGATCATCCCCTATGCTGGCATCGACCTAGCTGTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-'12-17,'12-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGAGAAGGGGGAGCCAAG
R:
AGCTAGGTCGATGCCAGCATA
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: