DreEX6011619 @ danRer10
Exon Skipping
Gene
ENSDARG00000035468 | slc25a25b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25b [Source:ZFIN;Acc:ZDB-GENE-060526-340]
Coordinates
chr5:31201198-31204883:+
Coord C1 exon
chr5:31201198-31201350
Coord A exon
chr5:31204471-31204578
Coord C2 exon
chr5:31204716-31204883
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGCTCTGTCCTTTAGATT
3' ss Score
10.85
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTCATGCAACGCGCAGTAACAGCATGGGTATCGCTGGAGGATTCACCCAGATGATTCGCGAGGGTGGACTGCGCTCACTGTGGAGAGGCAATGGGATCAATGTTTTGAAGATTGCACCTGAATCTGCTATCAAGTTCATGGCATATGAGCAG
Seq A exon
ATTAAGCGGCTCATTGGCAGTAATCAGGAGACGCTGGGGATCCTAGAGAGACTGGTTTCTGGTTCTCTAGCAGGCGCAATTGCGCAGAGCAGCATTTACCCAATGGAG
Seq C2 exon
GTTTTAAAGACTCGTCTTGCTCTGGGAAGGACGGGTCAGTACTCGGGAATTGCAGACTGTGCTAAACATATTTTTAAGAAGGAGGGCATGACAGCTTTCTATAAGGGTTACATTCCCAATATGCTGGGTATCATCCCTTATGCTGGAATAGACCTGGCTGTTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035468-'9-9,'9-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAGTAACAGCATGGGTAT
R:
AGAAAGCTGTCATGCCCTCCT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]