MmuEX6078686 @ mm9
Exon Skipping
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57174210-57178105:-
Coord C1 exon
chr17:57177953-57178105
Coord A exon
chr17:57177748-57177855
Coord C2 exon
chr17:57174210-57174377
Length
108 bp
Sequences
Splice sites
3' ss Seq
CACACCCACTCCCCCTGCAGTCT
3' ss Score
8.77
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGTACTCCTCCAAGAGCAACTTCAGAAACCTGCTGAGTGGACTGCGGAGCCTGGTCCAGGAGGGCGGCGTCCGCTCCCTCTGGCGGGGCAATGGCATCAACGTGCTCAAGATCGCCCCAGAGTATGCTATCAAGTTCTCTGTCTGTGAGCAG
Seq A exon
TCTAAGAATTTCTTCTACGGTGTGCACTCATCCCAGCTCTTCCAGGAACGGGTCGTCGCAGGCTCCCTGGCTGTGGCCGTCTCCCAGACGCTCATAAACCCCATGGAG
Seq C2 exon
GTACTCAAGACTCGGCTGACCCTTCGCTTCACTGGCCAGTATAAAGGGCTTCTGGACTGTGCCAGGCAGATCTTGGAACGGGATGGTACCCGAGCCCTATACCGAGGCTACCTGCCCAACATGTTGGGCATCATCCCCTATGCTTGCACCGACCTAGCTGTTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGCTGAGTGGACTGC
R:
CAGGTAGCCTCGGTATAGGGC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: