RnoEX0081953 @ rn6
Exon Skipping
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10007510-10010871:+
Coord C1 exon
chr9:10007510-10007662
Coord A exon
chr9:10007771-10007878
Coord C2 exon
chr9:10010704-10010871
Length
108 bp
Sequences
Splice sites
3' ss Seq
CACACCCACTCCTCCTGCAGTCC
3' ss Score
8.44
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTATACTCCTCCAAAAGTAACTTCAGGCACCTGCTGAGTGGCCTGCGGAGCCTGGTCCAGGAGGGCGGTATCCGCTCACTCTGGCGGGGCAATGGTATAAACGTGCTCAAGATCGCCCCGGAGTACGCTATCAAGTTCTCTGTCTTTGAGCAG
Seq A exon
TCCAGGAATTTCTTCTACGGTGTGCACACATCCCCGTCCTTCCAGGAACGGGTGGTCGCAGGCTCCCTGGCTGTGGCTATCTCCCAGACACTCATCAATCCCATGGAG
Seq C2 exon
GTACTCAAGACTCGACTGACCCTTCGCTTCACCGGGCAGTACAAAGGGCTTCTGGACTGTGCCAGGCAGATCTTGGAGCGGGACGGCACCCGAGCCCTCTACCGAGGCTACCTGCCCAACATGTTGGGCATCATACCCTACGCTTGTACTGACCTGGCTGTTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853-'8-6,'8-3,9-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGGAGGGCGGTATCC
R:
CAAGCGTAGGGTATGATGCCC
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]