DreEX0072296 @ danRer10
Exon Skipping
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54303896-54306947:-
Coord C1 exon
chr1:54306795-54306947
Coord A exon
chr1:54306480-54306593
Coord C2 exon
chr1:54303896-54304063
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTATGTGTGTTCAGATT
3' ss Score
8.4
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTTCACGGTCAGAGCTCAGATAAGGGGAACGTGTGGAGTGGTCTGCGGGCGATGGTGAAGGAGGGAGGACTCACTGCGCTCTGGAGAGGAAACGGCATTAATGTGCTTAAGATCGCTCCGGAGACTGCCATCAAATTCCTGGCTTATGAACAG
Seq A exon
ATTAAACGCTTGATGAGAGGCAGTAATGAAGGAGGAACACTGAAAGTTCATGAGAGATTTGTGGCTGGTTCATTGGCTGGAGCTACAGCTCAGACTATCATATACCCTATGGAG
Seq C2 exon
GTGCTGAAGACTCGGTTAACTCTGCGTAAAACGGGCCAGTATTCAAGCGTAGCAGACTGTGCCAAACAGATCCTGCAGAAGGAGGGCGTTCGGGCCTTTTATAAAGGCTACCTGCCAAACATGCTGGGCATCATCCCGTACGCGGGCATAGATCTCGCCGTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690-'7-9,'7-7,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
PF0015322=Mito_carr=PD(8.5=21.1),PF0015322=Mito_carr=PU(28.0=68.4)
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCGCTCTGGAGAGGAAA
R:
TAGACGGCGAGATCTATGCCC
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]