RnoINT0136916 @ rn6
Intron Retention
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9994255-9994682:+
Coord C1 exon
chr9:9994255-9994407
Coord A exon
chr9:9994408-9994574
Coord C2 exon
chr9:9994575-9994682
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CAGCCATATTCCACCCTCAGATC
3' ss Score
7.12
Exon sequences
Seq C1 exon
GTCCATGCCTCAAAGTCCAACCGGCTCAACATCCTAGGGGGCCTGAGAAACATGGTTCAAGAAGGGGGCCTCTTGTCCCTCTGGCGGGGCAACGGCATCAACGTGCTCAAGATCGCCCCTGAGTCTGCCATTAAATTCATGGCTTATGAACAG
Seq A exon
GTAGGACAGGTCCAGGAGAAAGTATCTTCAGCATTGGGAAGCAGAAAGTAAACACAAGGGCTTGTGGGCTTAACTTGGGCCTGGCCAGCACTGTGGCAGGCAAAGGACCACTCAATAATCCCCAAGGTTTCTATGCACCCAGTCCCACAGCCATATTCCACCCTCAG
Seq C2 exon
ATCAAGCGGGCCATCTGCGGGCAGCAAGAGACACTGCACGTTCAGGAGCGCTTCGTGGCTGGCTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781:ENSRNOT00000073000:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.8=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(8.6=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCCTCAAAGTCCAACC
R:
ATGATGGTTTGAGCTGTGGCC
Band lengths:
247-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]