BtaINT0134626 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003491 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr7:19239503-19239780:+
Coord C1 exon
chr7:19239503-19239665
Coord A exon
chr7:19239666-19239688
Coord C2 exon
chr7:19239689-19239780
Length
23 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TGGGGAGGCATGGACTGTAGACA
3' ss Score
-3.15
Exon sequences
Seq C1 exon
GTCCACGCCTCTAAGACCAACCGGCTGAACATCCTGGGGGGCCTCCGGAGCATGATCCAAGAGGGGGGCGTGCACTCCCTGTGGCGTGGCAACGGGATTAATGTGCTCAAGATTGCACCTGAGTCGGCAATCAAGTTCATGGCCTATGAGCAGGTGGGGGCAG
Seq A exon
GTGTGGGGAGGCATGGACTGTAG
Seq C2 exon
ACATGGGGTCTGCAGGATTGGCCTGGGAGAGGGGGAATGTCTTCGGGCCCCTGGGAGTGGGCATCGGTTCCCCTATGGGATGCCCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003491:ENSBTAT00000004536:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(60.0=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(2.2=6.5),PF0015322=Mito_carr=PU(22.1=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAGATTGCACCTGAGT
R:
AAGACATTCCCCCTCTCCCAG
Band lengths:
103-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]