DreINT0149978 @ danRer10
Intron Retention
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54306480-54306947:-
Coord C1 exon
chr1:54306795-54306947
Coord A exon
chr1:54306594-54306794
Coord C2 exon
chr1:54306480-54306593
Length
201 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GTGTGTGTATGTGTGTTCAGATT
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTTCACGGTCAGAGCTCAGATAAGGGGAACGTGTGGAGTGGTCTGCGGGCGATGGTGAAGGAGGGAGGACTCACTGCGCTCTGGAGAGGAAACGGCATTAATGTGCTTAAGATCGCTCCGGAGACTGCCATCAAATTCCTGGCTTATGAACAG
Seq A exon
GTACTGTGTGTGTGTGTGTGTGTGTGTTTGTTTATGTAGCTTATGAGGACACAAATGTATGATGACATTGGTGTGACCTACAATGTTTAGGTGGTTTATGAGGACGTGCCTTGTGTCTTGTAATTTGAAACTGTTTAAAATGATAGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTTCAG
Seq C2 exon
ATTAAACGCTTGATGAGAGGCAGTAATGAAGGAGGAACACTGAAAGTTCATGAGAGATTTGTGGCTGGTTCATTGGCTGGAGCTACAGCTCAGACTATCATATACCCTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690:ENSDART00000152666:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.2=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(8.5=21.1),PF0015322=Mito_carr=PU(28.0=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACGGTCAGAGCTCAGAT
R:
GGGTATATGATAGTCTGAGCTGTAGC
Band lengths:
260-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]