MmuINT0145568 @ mm9
Intron Retention
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57192664-57193122:-
Coord C1 exon
chr17:57192970-57193122
Coord A exon
chr17:57192772-57192969
Coord C2 exon
chr17:57192664-57192771
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CAGCCATGTTATACCCTCAGATC
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTCCACGCCTCAAAGTCCAACCGGCTTAACATTCTAGGGGGCCTGAGAAACATGATTCAAGAAGGGGGTGTCTTGTCCCTCTGGCGGGGCAACGGCATCAACGTGCTCAAGATAGCCCCCGAGTCTGCCATCAAATTCATGGCTTATGAACAG
Seq A exon
GTAGGACAGGGACAGGGACAGAAGAGAAGGTATTCAGCATTGAAAAGCAGATAGTAAACACAAGGGCTTGTGGGCTTAACTTGCGGTCCCCAGCACCACGCCTCCTGCTGGTCAGCACTGTGGCAAGCAGAGAATGTTGGAATGCAAGGACCCCAAGGTTCCCAGGTACCCAGTCCCACAGCCATGTTATACCCTCAG
Seq C2 exon
ATCAAGCGGGCCATCCGGGGGCAACAGGAGACACTGCACGTTCAGGAGCGCTTCGTGGCTGGTTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329-Slc25a23:NM_025877:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(53.8=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(11.8=24.3),PF0015322=Mito_carr=PU(28.9=70.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACGCCTCAAAGTCCAAC
R:
ATGATGGTTTGAGCTGTGGCC
Band lengths:
248-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: