BtaINT0134643 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98757520-98757894:+
Coord C1 exon
chr11:98757520-98757627
Coord A exon
chr11:98757628-98757726
Coord C2 exon
chr11:98757727-98757894
Length
99 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACCCGCCCTGGGCTCTGCAGGTC
3' ss Score
8.9
Exon sequences
Seq C1 exon
ATCAAACGTCTCATTGGGAGTGACCAGGAGACTCTGAGGATTCACGAGAGGCTCGTGGCAGGGTCCTTGGCAGGGGCCATCGCCCAGAGTAGTATCTACCCGATGGAG
Seq A exon
GTGAGGGCCATGTCAGTGCCGGGGCGGGCAGCCCGTGTTGGGGTGGGCCGGCGGACTGGGCCCTGCTCACGCTTCCATCACCCGCCCTGGGCTCTGCAG
Seq C2 exon
GTCCTGAAGACCCGGATGGCCCTGCGCAAGACAGGCCAGTACTCGGGCATGTTGGACTGTGCCAGGAAGATCCTGGCCCGAGAGGGCATGGCCGCCTTCTACAAAGGCTACGTCCCCAACATGCTGGGCATCATCCCCTACGCTGGCATAGACTTGGCCGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912:ENSBTAT00000015802:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
NA
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCGCCCAGAGTAGTATC
R:
TATGCCAGCGTAGGGGATGAT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development