HsaINT0151762 @ hg38
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128106150-128106520:+
Coord C1 exon
chr9:128106150-128106257
Coord A exon
chr9:128106258-128106352
Coord C2 exon
chr9:128106353-128106520
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCGCTGCTCCTGTTGTGCAGGTC
3' ss Score
8.42
Exon sequences
Seq C1 exon
ATCAAGCGCCTTGTTGGTAGTGACCAGGAGACTCTGAGGATTCACGAGAGGCTTGTGGCAGGGTCCTTGGCAGGGGCCATCGCCCAGAGCAGCATCTACCCAATGGAG
Seq A exon
GTGAGGGGCCGCCTGGGTCCTGGGGCGGGCAGTGGGCACAGGACTGGGGAGAGGCACAGGCTGTGCTCACGCGTCCCGCTGCTCCTGTTGTGCAG
Seq C2 exon
GTCCTGAAGACCCGGATGGCGCTGCGGAAGACAGGCCAGTACTCAGGAATGCTGGACTGCGCCAGGAGGATCCTGGCCAGAGAGGGGGTGGCCGCCTTCTACAAAGGCTATGTCCCCAACATGCTGGGCATCATCCCCTATGCCGGCATCGACCTTGCAGTCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339:ENST00000373066:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(8.5=22.2),PF0015322=Mito_carr=PU(28.0=72.2)
A:
NA
C2:
PF0015322=Mito_carr=FE(59.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCGCCTTGTTGGTAGTG
R:
GCAGTCCAGCATTCCTGAGTAC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains