HsaINT0152131 @ hg38
Intron Retention
Gene
ENSG00000167114 | SLC27A4
Description
solute carrier family 27 member 4 [Source:HGNC Symbol;Acc:HGNC:10998]
Coordinates
chr9:128352638-128353234:+
Coord C1 exon
chr9:128352638-128352747
Coord A exon
chr9:128352748-128353024
Coord C2 exon
chr9:128353025-128353234
Length
277 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CACACCAAGTTCACCCCCAGATT
3' ss Score
1.87
Exon sequences
Seq C1 exon
GAAACATCGTGGGAATCGGCCAGTGCCTGCTGCATGGCATGACGGTGGTGATTCGGAAGAAGTTCTCAGCCTCCCGGTTCTGGGACGATTGTATCAAGTACAACTGCACG
Seq A exon
GTGAGCGAGAGCGGGAAGGGTGAGCTGTCCCTTTCCCCTAGTTACCCTCTTCCCAACTACACTCCGGGGCATCTGTCTTATAGCTGAGGTGGCCAGTCATTCCAAAGGGCTCATTTGTGGCAAAGTTCCCATTGTTCAGATGGGAAGGCTGAGACCCGGAGAGGGAAAGGATGGCATGGCCAGCCCCTGGGGAGAGTAGGGGCTTGAGGGATCAGGAGAATCCTAGTGTAGTGAGGGCAGCCTCTGGAGCCTCGAATCACACCAAGTTCACCCCCAG
Seq C2 exon
ATTGTGCAGTACATTGGTGAACTGTGCCGCTACCTCCTGAACCAGCCACCGCGGGAGGCAGAAAACCAGCACCAGGTTCGCATGGCACTAGGCAATGGCCTCCGGCAGTCCATCTGGACCAACTTTTCCAGCCGCTTCCACATACCCCAGGTGGCTGAGTTCTACGGGGCCACAGAGTGCAACTGTAGCCTGGGCAACTTCGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167114:ENST00000300456:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACATCGTGGGAATCGGCC
R:
CCAGGCTACAGTTGCACTCTG
Band lengths:
303-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains