RnoINT0137306 @ rn6
Intron Retention
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8371514-8372033:+
Coord C1 exon
chr3:8371514-8371623
Coord A exon
chr3:8371624-8371823
Coord C2 exon
chr3:8371824-8372033
Length
200 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TCACACCACACTCACCCCAGATT
3' ss Score
5.51
Exon sequences
Seq C1 exon
GAAACATTGTGGGGATTGGCCAGTGCGTACTCCACGGCATGACTGTGGTGATCCGGAAGAAGTTTTCAGCCTCCCGGTTCTGGGATGACTGTATCAAGTACAACTGCACA
Seq A exon
GTGAGTGCCCCATTCCCACGTCTCCCCCTGCCACCACACACGGAGGCATCTGAACAGCTGAGACTTCAGAATAGTCTCTTGGGCAATGGATGTCTTCATTGCTCAGATGGGAAATCTGAGGCCCAGAGAGGGGAGGGACTGTTCGGCCTCTGGGGAGGTGACGAAGTGGGACATCCTCACTCACACCACACTCACCCCAG
Seq C2 exon
ATTGTACAGTACATTGGTGAGCTTTGCCGCTACCTCCTGAACCAGCCACCCCGTGAGGCTGAGTCTCGGCACAAGGTGCGCATGGCACTGGGCAACGGTCTCCGGCAGTCCATCTGGACCGACTTCTCCAGCCGTTTCCACATTCCCCAAGTGGCCGAGTTCTACGGGGCCACCGAGTGCAACTGTAGCTTGGGCAACTTTGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369:ENSRNOT00000019500:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTGTGGGGATTGGCCAG
R:
AAGCTACAGTTGCACTCGGTG
Band lengths:
299-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]