HsaINT0152345 @ hg38
Intron Retention
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133476237-133477241:-
Coord C1 exon
chr9:133477035-133477241
Coord A exon
chr9:133476337-133477034
Coord C2 exon
chr9:133476237-133476336
Length
698 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
GCGGCGGCTGTGTCTTGCAGGTG
3' ss Score
8.5
Exon sequences
Seq C1 exon
TCCGTGTTCACCCTGGGAGCAGCGGCCGGAGGCCTGAGTGCCATGATCCTCAACGACCTCCTGGGCCGGAAGCTGAGCATCATGTTCTCAGCTGTGCCGTCGGCGGCCGGCTATGCGCTCATGGCGGGTGCGCACGGCCTCTGGATGCTGCTGCTCGGAAGGACGCTGACGGGCTTCGCCGGGGGGCTCACAGCTGCCTGCATCCCG
Seq A exon
GTAAGGCCAGGCCTTCCCACCCAGGCGCCCCAATGCCTCTGTATTGGTGCTGAGCCTCCATCTGACTAAGGCCTCCCAGCCTCCATGCCTTCTGGGCAATGAGAATTGTTTGCCTTCCCTGCGGATGCCCAGGGCGCCTCAGCTCACCCCCAGCAGGGCAGCTAATTTGGGGGAAATTGTCTCCAGGTCCCCAGCTGCCCCCACTCTGGACTTTCCAAGCCTTCTACCCCGTTTCTTGACCGGTCAGATGTATTACTCAATTGGAGAAAATCCGCATTGAGCAATGGGTAGGAGAGGGAAGTCCCTGCCCTACACCCTCCCCGGGACCTTCTTATCTTATGTGGTACTCCACACGGGGCCTGGTGGTGAGCCCAGCAGAGGAGACAAAACTCACTGGGAGGCATGGACTCACCTGCTCAGCCCTGAAGCCTGGGAGCCCTCGGGCCTCCTTCCCAGCGTCATGCTGCCCATTTCCGAGCTGCGTACTTCCACCCACGTCACAGTTAGGGAAACTGAGGACAGAGAGAGATCAGGCAGGCCGCCCAAGGTCTTGCAGTGAGTCATGACCAGGACTCAGCCCCACCAGAAAGCCTCCACTTCCCACTTTCCGGGGTTCACAGGGGCTGACTCTCCCATCTCGGCCGGGCCTAGGAACCAGTATTTTCAGCAAAACCTGGTGCGGCGGCTGTGTCTTGCAG
Seq C2 exon
GTGTACGTGTCTGAGATTGCTCCCCCAGGCGTTCGTGGGGCTCTGGGGGCCACACCCCAGCTCATGGCAGTGTTCGGATCCCTGTCCCTCTACGCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326:ENST00000371899:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(91.5=98.2)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTGTTCACCCTGGGAG
R:
GCGTAGAGGGACAGGGATCC
Band lengths:
302-1000
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains