RnoINT0137462 @ rn6
Intron Retention
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5572418-5573268:-
Coord C1 exon
chr3:5573062-5573268
Coord A exon
chr3:5572522-5573061
Coord C2 exon
chr3:5572418-5572521
Length
540 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
TTGGGGCCTGTACCTTACAGGTG
3' ss Score
8.11
Exon sequences
Seq C1 exon
TCCGTGTTCACCCTGGGTGCCGCCGCTGGGGGCCTCAGTGCTATGCTACTCAATGACCTCTTGGGCCGGAAGCTCAGCATCATGTTTTCCGCTGTCCCCTCGGCCATTGGCTATGCACTCATGGCTGGTGCCCGTGGCCTCTGGATGCTTCTGCTGGGGAGGATGCTGACAGGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCG
Seq A exon
GTAAGACCAGATGTCCCCACTGCCTTGGCGCTGTTCTGGGCTACCCCTGCCTCTGAGCCTTTGTTCCATGAGAGTGTGTGGGGTCCCCAAGATTGCCCAGAGAATCTCAGCTCCCTCCATCAAAGCAGCTGACATCACTGTCACTCAAAAACTTCCTACTCTTGCGTTTTAACCTCAGTTCGATGCATTGCTCAACTGAAGAAAATTTGCATTGCACAAGGGATGTGAGGGGAAGTTCCTGCCCAGCCCCACCACAACTGCTTACCTCATGCAGCCCTCCATACACACACCTATCCTCTGGCAAGTCCAAAGGGAAAAGAAGTCAGTAGGGTAAATACAGACACCTGCTCAGCCCCAACTCTGAAGACCCTGGGCTTTTTTTGAGTCCCTGCCCTCATCCAAAGCACCAAAGTGGGTGCTTTTACATACTTCTTTTGCTAGGGAAGGTCAGAGCTTTGGTCAGAACAAGACCCCTACCAGCTTCTCCAGGCTCCCAAGTCCCTCTCACTAAACTCCCATGTTGGGGCCTGTACCTTACAG
Seq C2 exon
GTGTACGTGTCTGAGATTGCACCCCCGGGTGTTCGCGGGGCCCTGGGGGCCACGCCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTATGCCCTTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900:ENSRNOT00000008034:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTGTTCACCCTGGGT
R:
CAAGGGCATAGAGAGACAGGGA
Band lengths:
307-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]