HsaINT0152498 @ hg38
Intron Retention
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr5:177396733-177397074:+
Coord C1 exon
chr5:177396733-177396849
Coord A exon
chr5:177396850-177396949
Coord C2 exon
chr5:177396950-177397074
Length
100 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCCTCTCCCTCTGTCCCCAGGTC
3' ss Score
14.48
Exon sequences
Seq C1 exon
ACTTCCCTGCCCCCTTCACCTGGGTCACAGGCTACTTTGCCATGGTGGTGGGCGCCAGCATGACCTTCGTGGTCCAGAGCAGTTCTGTGTTCACCTCGGCCATCACCCCACTCATCG
Seq A exon
GTGAGTGCCCATGTAGAGGTGGAGTGGGGTGGGCCAGGGCTGGCAGGGAAAGGGCCGAAGGAGACGCTGGGGGTCCCACTTCCTCTCCCTCTGTCCCCAG
Seq C2 exon
GTCTTGGTGTGATCAGCATTGAGAGGGCCTACCCGCTCACACTGGGTTCCAACATCGGCACCACCACCACGGCCATCCTGGCTGCCCTGGCCAGCCCCAGGGAGAAGCTGTCCAGCGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183:ENST00000324417:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCTGCCCCCTTCAC
R:
CTGGAAAGCGCTGGACAG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains