RnoINT0137599 @ rn6
Intron Retention
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9749584-9749949:-
Coord C1 exon
chr17:9749833-9749949
Coord A exon
chr17:9749709-9749832
Coord C2 exon
chr17:9749584-9749708
Length
124 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
CATTCCCTTCTGCCCACCAGGCC
3' ss Score
7.86
Exon sequences
Seq C1 exon
ACTTCCCAGCCCCCTTCACTTGGGTCACAGGCTACTTTGCCATGGTGGTGGGCGCCAGCATGACGTTTGTTGTCCAGAGCAGTTCCGTGTTCACCTCAGCCATCACTCCGCTCATTG
Seq A exon
GTGAGAGCCCGTGACCAGCCATGGGCAGCAGTGGGCGGGAGCAGGGCCGGGCGGGGGGTGCAGGGGTTGTGTGGATGCTCAAGGAAGTAGACCAAAAAGAATGGCATTCCCTTCTGCCCACCAG
Seq C2 exon
GCCTGGGTGTGATCAGTATTGAGCGGGCCTACCCTCTCACCCTGGGCTCCAACATTGGTACCACCACTACAGCCATCCTGGCAGCACTGGCCAGCCCCAGGGAGAAGCTCTCCAGCTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262:ENSRNOT00000033749:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCCAGCCCCCTTCAC
R:
CTGAAAGGAGCTGGAGAGC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]