HsaINT0152528 @ hg19
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:HGNC Symbol;Acc:20305]
Coordinates
chr9:140127027-140127379:+
Coord C1 exon
chr9:140127027-140127155
Coord A exon
chr9:140127156-140127235
Coord C2 exon
chr9:140127236-140127379
Length
80 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CACCTCTCTTGCCGGTGTAGGCA
3' ss Score
8.03
Exon sequences
Seq C1 exon
AGCTCCGCGTGGCCGGCAGGCTGCGCCGCGTGGCCGGCAGCGTCCTCAAGGCCTGCGGGCTCCTCGGCAGCCTGTACTTCTTCATCTGCTCTCTGGACGTCCTCAGCTCCGCCTTCCAGCTGCTGGGCA
Seq A exon
GTGAGTGACGGGACGGGTGCCCAGGGCGGGGCGGGCAACCAGCCCTCCGCAGCTTCAGCGCACCTCTCTTGCCGGTGTAG
Seq C2 exon
GCAAAGTGGCCGGAGACATCTTCAAGGACAACGTGGTGCTGTCCAACCCTGTGGCTGGACTGGTCATTGGCGTGCTGGTCACAGCCCTGGTGCAGAGTTCCAGCACGTCCTCCTCCATCGTGGTCAGCATGGTGGCTGCTAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569-SLC34A3:NM_080877:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.6=38.6)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTCTCTGGACGTCCTC
R:
CTGACCACGATGGAGGAGGAC
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)