RnoINT0137627 @ rn6
Intron Retention
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2451731-2452084:-
Coord C1 exon
chr3:2451956-2452084
Coord A exon
chr3:2451875-2451955
Coord C2 exon
chr3:2451731-2451874
Length
81 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CATCTCCCTGTGGGGGACAGGCA
3' ss Score
3.85
Exon sequences
Seq C1 exon
AGGTTGGCACAGCCAGCAAGCTGCACCAGGTGGTCAGCGGCTTCCTCAAGGCATGCGGACTCCTGGGAAGCCTCTACTTTTTCATCTGCTCCCTGGACATCCTCAGCTCTGCGTTCCAGCTACTAGGCA
Seq A exon
GTGAGTGGTCAGGCAGGAGGCCAGGGTGGGGATGGGAAGTCAGTGTTTTACAGCCTGGTTGCATCTCCCTGTGGGGGACAG
Seq C2 exon
GCAAGATGGCCGGAGACATTTTTAAGGACAATGTGGTGCTGTCCAACCCTGTGGCTGGCTTGGTCATTGGTGTGGTGGTCACCGTCCTTGTACAGAGCTCCAGCACATCTTCCTCTATCGTGGTCAGCATGGTGGCCTCTAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451:ENSRNOT00000014060:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.6=38.6)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGCGTTCCAGCTACTA
R:
ACTTAGAGGCCACCATGCTGA
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]