HsaINT0153384 @ hg38
Intron Retention
Gene
ENSG00000164889 | SLC4A2
Description
solute carrier family 4 member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
Coordinates
chr7:151074675-151075508:+
Coord C1 exon
chr7:151074675-151074841
Coord A exon
chr7:151074842-151075254
Coord C2 exon
chr7:151075255-151075508
Length
413 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
AGCACCCCTCCCGCTCTCAGGCT
3' ss Score
7.94
Exon sequences
Seq C1 exon
AAGCTGAGCGTTCCCAGTGGATTCTCGGTGACTGCCCCAGAAAAGAGGGGCTGGGTCATCAACCCCCTGGGAGAGAAGAGCCCCTTCCCTGTGTGGATGATGGTTGCCAGCCTGCTGCCCGCCATCCTGGTCTTCATTCTCATCTTCATGGAGACACAGATCACCAC
Seq A exon
GTGAGTGGTCCTAGCCAAAGGGGTGTGAGAGGCCAGAGCCCCAGGCCAGGCTGGGGAACTCAGCATGGAACCTCCAGCCACACTGGGCAATCCCAGGGACCTCAGGGAACCTTGGATGCCCAGATGGCCACAGTTTATTCTGTAGACAGCAGAAAAACCCCGATGTTTGCTGGGACAGGAACAGCACGTGGAGGGGCAGGCCACCCTGGCAGTGCTAGCTGGGAGCTGTCATGGACGATAAGGGCTGGGGGCCCAGGTTTTGCTCTGTAACGGAATTTGAATCCTGACGGAATGGACAGGGACCGCCAGGTTCCAAAGCCAGATGGAGGGACTGGCTGGGCATTCTGGAAAGACCCTGTGGTCTGCGGAGCTGAGTCCAGCCTGGGCCTCAGCAGCACCCCTCCCGCTCTCAG
Seq C2 exon
GCTCATCATCTCCAAGAAGGAGCGCATGCTGCAGAAGGGCTCCGGCTTCCACCTGGACCTGCTGCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTTGGCCTGCCCTGGTTGGCTGCTGCCACTGTCCGCTCTGTCACTCACGCCAACGCGCTCACTGTCATGAGCAAGGCTGTGGCACCTGGGGACAAGCCCAAGATTCAGGAAGTCAAGGAGCAGCGGGTGACGGGGCTGCTGGTTGCCCTGCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164889:ENST00000413384:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.1=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCGTTCCCAGTGGATTC
R:
CACAGCCTTGCTCATGACAGT
Band lengths:
342-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains