GgaINT1025682 @ galGal4
Intron Retention
Gene
ENSGALG00000028756 | SLC4A2
Description
anion exchange protein 2 [Source:RefSeq peptide;Acc:NP_990294]
Coordinates
chr2:285315-286140:-
Coord C1 exon
chr2:285974-286140
Coord A exon
chr2:285569-285973
Coord C2 exon
chr2:285315-285568
Length
405 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGC
5' ss Score
5.62
3' ss Seq
CAGCCCGCCCTTGTGCCCAGGCT
3' ss Score
4.56
Exon sequences
Seq C1 exon
AAGCTGAGCGTGCCCAGCGGGTTCTCGGTGACGGCCCCCGATAAGCGGGGCTGGGTGATCAACCCGCTGGGCGAGAGGAGCGACTTCCCGGTGTGGATGATGGTGGCCAGCGGCCTCCCCGCCGTCCTCGTCTTCATCCTCATCTTCATGGAGACGCAGATCACCAC
Seq A exon
GTGAGCGCAGCGGGGCCGGGCTGGGACGTGCACAGGGCTGGGTGCGCCGTGCCGAGCCGTGCCGTGCTGTGCTGAGCTGCGCTGAGCCATTCCACGCTGTGCTGTGCCATTCTCTGCTCTGCCGTCCTGTGCTGTGCTGAGCCTTGCCAAACTGTGCCATGCCATGCTGAGCCGTGCCCACCTGGGCCACGCTGTGCTGTGTGCTACCGCGCCGTGCCACGTAGTGCTGAGCCTTGCCAAGCTGAGCCGTTCCGCGTCGGGACAACACGTGCCATGCCATGCCATGCTGTACTGACCCGTGCCAAACCGCGCCGTGCCATCTTGCGCTATGCCATGCCGAGCCATTCTAAGCTGCGCCGTGCTGTGCTGAGCCGAGCGCTGCCAACAGCCCGCCCTTGTGCCCAG
Seq C2 exon
GCTGATCATCAGCAAGAAGGAGCGGATGCTGCAGAAGGGCTCCGGGTTCCACCTCGACCTGCTGCTCATCGTGGCCATGGGAGGCTTCTTCGCGCTCTTCGGGCTGCCCTGGCTTGCGGCCGCCACCGTGCGCTCCGTCACACACGCCAACGCCCTCACGGTGATGAGCAAGGCGGTGGCGCCGGGGGACAAGCCCAAGATCCAGGAGGTGAAGGAGCAGCGCGTCACCGGGCTGCTGGTGGCTGTGCTCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028756:ENSGALT00000043503:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(18.8=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(29.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAGCGGGGCTGGGTGATC
R:
GCTCCTTCACCTCCTGGATCT
Band lengths:
346-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]