GgaEX1053576 @ galGal4
Exon Skipping
Gene
ENSGALG00000028756 | SLC4A2
Description
anion exchange protein 2 [Source:RefSeq peptide;Acc:NP_990294]
Coordinates
chr2:285315-286409:-
Coord C1 exon
chr2:286320-286409
Coord A exon
chr2:285974-286140
Coord C2 exon
chr2:285315-285568
Length
167 bp
Sequences
Splice sites
3' ss Seq
AGCGTCCCGTGCCCCCGCAGAAG
3' ss Score
9.21
5' ss Seq
CACGTGAGC
5' ss Score
5.62
Exon sequences
Seq C1 exon
ATCCGGCGCCTCATCGGGGACTTCGGGGTGCCCATTGCCATCCTGGTGATGGTGCTGGTGGACTACAGCATCCGCGACACCTACACGCAG
Seq A exon
AAGCTGAGCGTGCCCAGCGGGTTCTCGGTGACGGCCCCCGATAAGCGGGGCTGGGTGATCAACCCGCTGGGCGAGAGGAGCGACTTCCCGGTGTGGATGATGGTGGCCAGCGGCCTCCCCGCCGTCCTCGTCTTCATCCTCATCTTCATGGAGACGCAGATCACCAC
Seq C2 exon
GCTGATCATCAGCAAGAAGGAGCGGATGCTGCAGAAGGGCTCCGGGTTCCACCTCGACCTGCTGCTCATCGTGGCCATGGGAGGCTTCTTCGCGCTCTTCGGGCTGCCCTGGCTTGCGGCCGCCACCGTGCGCTCCGTCACACACGCCAACGCCCTCACGGTGATGAGCAAGGCGGTGGCGCCGGGGGACAAGCCCAAGATCCAGGAGGTGAAGGAGCAGCGCGTCACCGGGCTGCTGGTGGCTGTGCTCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028756_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.9=100)
A:
PF0095516=HCO3_cotransp=FE(18.8=100)
C2:
PF0095516=HCO3_cotransp=FE(29.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGTGCTGGTGGACTACA
R:
CTCCTGGATCTTGGGCTTGTC
Band lengths:
252-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]