RnoEX0082807 @ rn6
Exon Skipping
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7265596-7266578:-
Coord C1 exon
chr4:7266489-7266578
Coord A exon
chr4:7266208-7266371
Coord C2 exon
chr4:7265596-7265849
Length
164 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTGCCTTGCAGAAGCTA
3' ss Score
0.35
5' ss Seq
CACGTGAGC
5' ss Score
5.62
Exon sequences
Seq C1 exon
ATCCGGCGGGTAATTGGGGACTTTGGGGTGCCCATCGCGATCCTCATCATGGTGCTTGTGGATTACAGTATTGAGGATACCTACACCCAG
Seq A exon
CTAAGTGTGCCCAGTGGGTTCTCAGTGACAGCCCCAGACAAGCGGGGCTGGGTCATCAACCCCCTTGGAGAGAAGACTCCTTTCCCTGTGTGGATGATGGTGGCCAGCCTGTTGCCTGCCGTTCTGGTGTTCATCCTCATCTTCATGGAGACACAGATCACCAC
Seq C2 exon
GTTGATCATCTCCAAGAAAGAGCGGATGCTTCAGAAGGGCTCTGGCTTCCACCTTGATCTGTTGCTCATTGTAGCCATGGGTGGCATCTGTGCCCTCTTTGGCCTGCCTTGGTTGGCTGCTGCCACTGTCCGCTCTGTCACTCATGCCAATGCACTCACTGTCATGAGCAAGGCTGTGGCACCTGGTGACAAACCCAAGATTCAGGAAGTCAAGGAGCAGCGGGTGACCGGGCTGCTGGTGGCCCTGCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347-'37-26,'37-25,38-26
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.9=100)
A:
PF0095516=HCO3_cotransp=FE(11.2=100)
C2:
PF0095516=HCO3_cotransp=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTAATTGGGGACTTTGGG
R:
GCCTTGCTCATGACAGTGAGT
Band lengths:
258-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]