GgaEX1053581 @ galGal3
Exon Skipping
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23590474-23592959:-
Coord C1 exon
chr7:23592870-23592959
Coord A exon
chr7:23591124-23591290
Coord C2 exon
chr7:23590474-23590727
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGGCTACACCATCAGAAG
3' ss Score
1.99
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCTCGGCGGATCATTGGAGACTTCGGGATCCCCATCTCCATCCTAGTCATGGTGCTGGTGGATTACACCATCACAGACACGTACACACAG
Seq A exon
AAGCTGAATGTCCCATCGGGCCTGTCGGTCACATCTCCTCACAAGCGTGGCTGGTTCATTCACCCCATGGGCAGCAGTGGGACCTTTCCATTGTGGATGATGTTTGCCTCTGCCATCCCTGCCCTCCTGGTCTTCATTCTTATCTTCATGGAGACGCAGATCACTAC
Seq C2 exon
GCTGATTGTGAGCAAGAAGGAGAGGAAGCTGTTGAAAGGCTCTGGCTTCCACCTGGACCTGCTGCTCATTGGCACTATGGGGGGGCTCTGTGCACTCTTTGGACTGCCCTGGCTGACCGCGGCTACAGTGCGCTCCGTCACCCATGTCAATGCCCTGACGGTCATGAGCAAGGCCATCGCACCAGGAGAGAAGCCCAAGATCGAGGAGGTGAAGGAGCAGCGTGTGACAGGAGTGCTTATCGCTGCCCTTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224-'23-28,'23-27,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.8=100)
A:
PF0095516=HCO3_cotransp=FE(18.6=100)
C2:
PF0095516=HCO3_cotransp=FE(28.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGATCATTGGAGACTTCGG
R:
CAGGGCATTGACATGGGTGAC
Band lengths:
242-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]