BtaEX6011794 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108283113-108284590:+
Coord C1 exon
chr2:108283113-108283202
Coord A exon
chr2:108283713-108283879
Coord C2 exon
chr2:108284337-108284590
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTCTGGCCGTGCAGAAG
3' ss Score
7.02
5' ss Seq
CGCGTGAGG
5' ss Score
4.08
Exon sequences
Seq C1 exon
GCTCGCCGCATCATCGGGGACTTCGGCATCCCCATCTCCATTCTGGTGATGGTCCTGGTGGATTACTCCATCACAGACACCTACACACAG
Seq A exon
AAGCTGACGGTGCCCACGGGGCTCTCGGTGACCTCCCCCAGCAAGCGCACGTGGTTCATCCCGCCCCTGGGCAGCGCGCGTCCGTTCCCGCCCTGGATGATGGTGGCGGCCGCCGTGCCCGCGCTCCTGGTCCTCATCCTGATCTTCATGGAGACACAGATCACCGC
Seq C2 exon
GCTCATCGTTAGCCAGAAGGCACGGAGGCTGCTCAAAGGCTCTGGCTTCCACCTGGACCTGCTTCTGATCGGCTCCCTGGGTGGGCTCTGTGGCTTGTTTGGGTTGCCCTGGCTCACAGCCGCCACCGTCCGCTCGGTGACCCACGTGAATGCGCTGACTGTTATGCGCACTGCCATTGCGCCCGGCGACAAGCCCCAGATCCAGGAAGTGCGGGAGCAGCGGGTCACTGGAGTGCTCATCGCCAGCCTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.8=100)
A:
PF0095516=HCO3_cotransp=FE(18.5=100)
C2:
PF0095516=HCO3_cotransp=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCCCATCTCCATTCTGG
R:
CAATGGCAGTGCGCATAACAG
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]