RnoEX6040506 @ rn6
Exon Skipping
Gene
ENSRNOG00000020138 | Slc4a3
Description
solute carrier family 4 member 3 [Source:RGD Symbol;Acc:3712]
Coordinates
chr9:82751637-82753141:+
Coord C1 exon
chr9:82751637-82751726
Coord A exon
chr9:82752134-82752300
Coord C2 exon
chr9:82752888-82753141
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTCCTGCCATTGCAGAAG
3' ss Score
9.27
5' ss Seq
TGCGTGAGA
5' ss Score
2.24
Exon sequences
Seq C1 exon
GCTCGGCGCGTCATCGGGGACTTCGGCATTCCCATCTCCATCCTGGTGATGGTCCTTGTGGATTACTCTATCACAGACACCTACACACAG
Seq A exon
AAGCTGACGGTGCCTACAGGGCTCTCAGTGACTTCCCCGCATAAGCGCACGTGGTTCATCCCACCCTTGGGCAGTGCCCGCCCCTTCCCACCATGGATGATGGTGGCTGCTGCTGTCCCTGCACTCTTGGTCCTCATCCTGATATTCATGGAGACTCAGATCACTGC
Seq C2 exon
GCTCATCGTCAGCCAGAAGGCACGGAGGCTACTCAAGGGTTCCGGCTTCCATCTTGACCTGCTGTTGATTGGCTCTTTGGGTGGCCTCTGTGGGCTCTTCGGCTTGCCCTGGCTCACAGCCGCCACTGTCCGCTCTGTCACCCATGTCAACGCGTTGACGGTGATGCGTACTGCCATTGCACCTGGTGACAAGCCCCAGATCCAGGAGGTGCGGGAGCAGCGAGTCACCGGGGTGCTCATTGCCAGCCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020138-'33-40,'33-39,34-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.7=100)
A:
PF0095516=HCO3_cotransp=FE(18.4=100)
C2:
PF0095516=HCO3_cotransp=FE(28.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCGGCATTCCCATCTCC
R:
CAGTACGCATCACCGTCAACG
Band lengths:
245-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]