HsaEX6018774 @ hg19
Exon Skipping
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4, anion exchanger, member 3 [Source:HGNC Symbol;Acc:11029]
Coordinates
chr2:220502886-220504457:+
Coord C1 exon
chr2:220502886-220502975
Coord A exon
chr2:220503425-220503591
Coord C2 exon
chr2:220504204-220504457
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTCCTGCCATGCAGAAG
3' ss Score
8.21
5' ss Seq
GGCGTGAGA
5' ss Score
1.2
Exon sequences
Seq C1 exon
GCTCGTCGCATCATCGGGGACTTTGGCATCCCCATCTCCATCCTGGTGATGGTCCTGGTGGATTACTCCATCACAGACACCTACACGCAG
Seq A exon
AAGCTGACAGTGCCTACAGGGCTCTCAGTGACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGGGCAGTGCCCGTCCTTTCCCGCCGTGGATGATGGTGGCAGCCGCTGTTCCCGCCCTCCTCGTCCTCATCCTGATCTTCATGGAGACACAGATCACGGC
Seq C2 exon
GCTTATCGTCAGCCAGAAGGCGCGGAGGCTGCTCAAGGGCTCCGGTTTCCACCTGGACCTGCTCCTCATTGGCTCCCTGGGGGGGCTCTGTGGGCTGTTTGGGTTGCCCTGGCTCACGGCTGCCACGGTCCGCTCCGTCACCCATGTCAATGCGTTGACAGTGATGCGTACTGCCATCGCGCCTGGTGACAAGCCCCAGATCCAGGAGGTGCGGGAGCAGCGGGTCACTGGTGTGCTCATCGCCAGCCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-'25-32,'25-31,26-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.9=100)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCGGGGACTTTGGCAT
R:
CGCATCACTGTCAACGCATTG
Band lengths:
250-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)