MmuEX6025609 @ mm9
Exon Skipping
Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75551986-75553572:+
Coord C1 exon
chr1:75551986-75552075
Coord A exon
chr1:75552514-75552680
Coord C2 exon
chr1:75553319-75553572
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTCCTGCCATGCAGAAG
3' ss Score
8.27
5' ss Seq
TGCGTGAGA
5' ss Score
2.24
Exon sequences
Seq C1 exon
GCTCGGCGCATCATCGGGGATTTTGGCATTCCCATCTCCATCCTGGTGATGGTCCTTGTGGATTATTCTATCACAGACACCTACACACAG
Seq A exon
AAGCTGACGGTGCCTACAGGGCTCTCAGTGACTTCCCCTCATAAGCGCACATGGTTCATCCCACCCTTGGGCAGTGCCCGCCCCTTCCCACCATGGATGATGGTGGCTGCTGCTGTCCCCGCGCTCTTGGTCCTCATCCTCATATTCATGGAGACACAGATCACTGC
Seq C2 exon
GCTCATTGTCAGCCAGAAGGCACGGAGGCTACTCAAGGGCTCCGGCTTCCATCTTGACCTGCTTTTGATTGGCTCTTTGGGCGGCCTCTGTGGCTTGTTCGGCTTGCCCTGGCTCACAGCTGCCACTGTGCGCTCTGTCACTCATGTCAACGCGTTGACGGTAATGCGGACTGCCATTGCGCCCGGTGACAAGCCCCAGATCCAGGAGGTGCGGGAGCAGCGGGTCACCGGGGTGCTCATTGCCAGCCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.7=100)
A:
PF0095516=HCO3_cotransp=FE(18.3=100)
C2:
PF0095516=HCO3_cotransp=FE(28.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGGGATTTTGGCATTCCC
R:
CAGTCCGCATTACCGTCAACG
Band lengths:
251-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: