DreEX0073053 @ danRer10
Exon Skipping
Gene
ENSDARG00000052330 | slc4a2b
Description
solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
Coordinates
chr24:33391421-33393284:-
Coord C1 exon
chr24:33393195-33393284
Coord A exon
chr24:33392616-33392782
Coord C2 exon
chr24:33391421-33391674
Length
167 bp
Sequences
Splice sites
3' ss Seq
CGCAATGCTCCACCTTGCAGAAA
3' ss Score
7.88
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TTAAGGAGAGTTATTGGAGATTTTGGAGTTCCTATTGCCATTCTCATCATGGTTCTGGTGGACTACAGTGTTAAAGACACATACACACAG
Seq A exon
AAACTAAGTGTACCCCGAGGTTTTTCAGTAACTAGTCCTGATAAGCGAGGCTGGATAGTCAATCCTCTGGGCTCGGACGGTCAGTTTCCCATCTGGATGATGTTTGCCAGCATTCTTCCAGCTCTGCTCGTCTTCATTCTTATCTTTATGGAGACACAAATCACCAC
Seq C2 exon
GTTGATAGTCAGCAAGAAAGAGCGCATGCTGGTCAAGGGTTCTGGTTTCCATCTGGATCTGTTGCTCATCGTGACTCTGGGTGGCACCAGTGCGCTGTTCGGTCTGCCTTGGATGGCTGCAGCCACTGTACGCTCCGTCACCCATGCAAACGCCCTCACCGTGATGAGTAAAGCAGTCGCTCCAGGAGACAAACCTCGAATCCAGGAGGTCAAGGAGCAGAGGGTGACTGGGTTACTGGTAGCCATACTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052330-'22-24,'22-23,23-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.9=100)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTGGTGGACTACAGTGT
R:
TGACCTCCTGGATTCGAGGTT
Band lengths:
253-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]