HsaEX6011301 @ hg38
Exon Skipping
Gene
ENSG00000164889 | SLC4A2
Description
solute carrier family 4 member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
Coordinates
chr7:151074399-151075508:+
Coord C1 exon
chr7:151074399-151074488
Coord A exon
chr7:151074675-151074841
Coord C2 exon
chr7:151075255-151075508
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACACTGTGTCTGCCCTGCAGAAG
3' ss Score
9.73
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATCCGGCGGGTGATTGGGGACTTTGGGGTGCCCATCGCCATCCTCATCATGGTGCTTGTGGATTACAGTATTGAGGACACCTATACCCAG
Seq A exon
AAGCTGAGCGTTCCCAGTGGATTCTCGGTGACTGCCCCAGAAAAGAGGGGCTGGGTCATCAACCCCCTGGGAGAGAAGAGCCCCTTCCCTGTGTGGATGATGGTTGCCAGCCTGCTGCCCGCCATCCTGGTCTTCATTCTCATCTTCATGGAGACACAGATCACCAC
Seq C2 exon
GCTCATCATCTCCAAGAAGGAGCGCATGCTGCAGAAGGGCTCCGGCTTCCACCTGGACCTGCTGCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTTGGCCTGCCCTGGTTGGCTGCTGCCACTGTCCGCTCTGTCACTCACGCCAACGCGCTCACTGTCATGAGCAAGGCTGTGGCACCTGGGGACAAGCCCAAGATTCAGGAAGTCAAGGAGCAGCGGGTGACGGGGCTGCTGGTTGCCCTGCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164889-'45-48,'45-46,46-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.8=100)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGGGGACTTTGGGGTG
R:
ACAGCCTTGCTCATGACAGTG
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains