BtaEX6029537 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011226 | SLC4A2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
Coordinates
chr4:114448544-114449564:+
Coord C1 exon
chr4:114448544-114448633
Coord A exon
chr4:114448796-114448962
Coord C2 exon
chr4:114449311-114449564
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCCGACCCTCTGCCCTGCAGAAG
3' ss Score
8.06
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GTACGGCGCGTGATTGGGGACTTTGGGGTGCCCATCGCCATCCTCGTCATGGTGCTCGTGGATTACAGTATTGAGGACACCTACACCCAG
Seq A exon
AAGCTGAGCGTGCCCAGTGGCTTCTCAGTGACAGCCCCAGAGAAGCGCGGCTGGGTCATCAACCCCCTGGGGGAGAAGAGCACCTTCCCCGTGTGGATGATGGTTGCCAGCCTGCTGCCCGCCATCTTGGTCTTCATCCTTATCTTCATGGAGACACAGATCACCAC
Seq C2 exon
GCTGATCATCTCCAAGAAGGAGCGCATGCTTCAGAAGGGTTCTGGCTTCCACCTGGACCTGCTGCTCATCGTGGCCATGGGCGGCATCTGTGCCCTCTTCGGCTTGCCATGGTTGGCTGCCGCCACTGTCCGCTCCGTCACGCATGCCAACGCGCTCACGGTCATGAGCAAGGCAGTGGCACCCGGGGACAAGCCCAAGATCCAGGAGGTCAAGGAGCAGCGGGTGACAGGGCTGCTGGTGGCCCTGCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011226-'20-26,'20-24,21-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.8=100)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCATGGTGCTCGTGGATTA
R:
GACCTCCTGGATCTTGGGCTT
Band lengths:
257-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]