MmuEX6016341 @ mm9
Exon Skipping
Gene
ENSMUSG00000028962 | Slc4a2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Coordinates
chr5:23944874-23945808:+
Coord C1 exon
chr5:23944874-23944963
Coord A exon
chr5:23945050-23945216
Coord C2 exon
chr5:23945555-23945808
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACATTATCCCTGCCTTGCAGAAA
3' ss Score
9.73
5' ss Seq
CACGTGAGC
5' ss Score
5.62
Exon sequences
Seq C1 exon
ATCCGGCGGGTAATTGGGGACTTTGGGGTGCCCATCGCGATCCTCATCATGGTGCTTGTGGATTACAGTATTGAGGACACCTACACCCAG
Seq A exon
AAACTGAGTGTGCCCAGCGGATTCTCAGTGACAGCCCCAGACAAGCGGGGCTGGGTCATCAACCCCCTTGGAGAAAAGACCCCCTTCCCTGTGTGGATGATGGTGGCCAGCCTGCTGCCTGCTGTTCTGGTGTTCATCCTCATCTTCATGGAGACACAGATCACCAC
Seq C2 exon
GCTGATCATCTCCAAGAAAGAGAGGATGCTGCAGAAGGGCTCTGGCTTCCATCTCGACCTGTTGCTCATTGTAGCCATGGGTGGCATCTGTGCCCTCTTTGGCCTGCCTTGGTTGGCCGCTGCCACTGTCCGCTCTGTCACCCATGCCAATGCACTCACTGTCATGAGCAAGGCTGTGGCACCTGGGGACAAACCCAAGATTCAGGAAGTCAAGGAACAGCGTGTGACAGGGCTGCTGGTGGCCCTGCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028962-'36-33,'36-32,37-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.8=100)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTAATTGGGGACTTTGGG
R:
GCCTTGCTCATGACAGTGAGT
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: