HsaINT0153468 @ hg19
Intron Retention
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:HGNC Symbol;Acc:18168]
Coordinates
chr2:74565982-74569661:-
Coord C1 exon
chr2:74569585-74569661
Coord A exon
chr2:74566031-74569584
Coord C2 exon
chr2:74565982-74566030
Length
3554 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ATCTCTGTTTTTGTCCACAGGTG
3' ss Score
13.74
Exon sequences
Seq C1 exon
GCATCCCAGGATTTGGAATTCAGCTGTGAGCTCATGAGCTGATGGATGTTTCCAGGAGTACCCTGAAGACCACCCAG
Seq A exon
GTATGCTCTCCCCACCTCCTTTATTTTGGATGGACCAGTCTAAGGAGAGTCATCTTTTCCCACACCATTGGTGGCACTCAGTGAGTGGCTTGTTGCTTGACTGAATGCCTGCCCACACCCTCTCCAGTCAAGTTTATCTTGAGTAACTAAACACTTAGCAATGGAGACACTCATACATCTCCACTGCACTAGAAGTAGGGATGGTGGCCATGCCAACAAAGGAGATAACTTTAGCACAAAGGATGTCACAAGAAACAGATAGTAGAGTGTGTTCTCCAGTGTTATCATTTCCCAAACCAGAATCAACTGGTCTTGGGTTTCCTTCCCTCATCCTTCATCTGTAGAAAACTTTGTTTCTTGAGCTACTTCAGATCTACTTCCCTATCTTAAGAGGTGGGCTATGTGCTTCTTCTGCTAATTTATTATCTCAGAAGTACATAATTTGAGCAATTTTATATAGTTTTGAGGACAGGAGCCCTGTAAGAGTCTCTTACTCAGAAATGGATTCAGCTTGGTTTGAGGTTTAATAGGTCATTGCAATGCTCCCTTCTGGTATCACAGGACATAAGCTGGGTTGGGCGGAGTCCCCCTTTTGTGTCTTAGCCTTCCTCTCCTTACTCCAGAGTAAGAGCAGCCCTGATGGAAAAACAAAATTACCATCCATGCCTACTTCATTTCTGCCCCTCTTACTCTAAGTCTGGGCAATCCGCAACATCTTTTTATATTGGACTTCCTAGATCACAGACTCTTTTTTTAGGAAGAGTCAATTCAAGCCACCCAGGACTTATGATCCCTTGCTCTGTGTCGGGCACAGTGTGAGCACAGTAATGGCATGGGCTGCCTGATGTGGGGCAGTCCCTCTTGGTCAGCAATTCACTCAGCAGCCATCTCAGTGCCCCCTGTGTAAATTTGAGGCACTTTGCCAGGCTGTGGGAACAGTGTGGGGTTAAACAGCACATGGTCCTTGCCCTCAGAAAGCTTAAAATCCAAAGTCAGATACAAGGTTATTTAACAGATGCGTGTTAATTAACAATTAAAGCTAATGTGCACTGTTCCATTGAACAAACATGACTTATGTGGTAAAATCAGAAAGCAGCTTGATTTTTGTCTCTTACTGCTCTTTTACATTTACTCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCTAGGCTGGAGTGCAGTGGCACAATAATTGGCTCGCTGCAACCTCCACCTCCTGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGTGGTTGTAGGCACCCACCACCACGCCCAACTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGACCAGGCTGGTCTCGAACTCCTGACCTCAGGCGATCCACCCACCTCGGCCTCCCAAAGTGTTGAGATTACAGGCGTGAGCCACTGCACCCAGCCTCTTTTACATTTATTCGGTGGGACTAGCTCTTGCTTTGCCCCTGAATGGAATTTAGGCAAGTCACAAGGTTGTTCCAGCCACCCTTGGTCTCAGTCTCATTTTAATAATTATAATTTCCAGTCCTACCTAAAGATACCACTTCAATCTTGACTTGGAGTGGAGCCTCTTCTGGTGCTGCTAAAGAACAGAGGCCCGTGGTGGATGGTGGTCTGGATGGGGAGTCCCTGGTTTCCACTCTTCCTCACTTATTTAGCTAACCAGGGTCCTCAACCCCGTCAGGGTTGTTGCCTGGAAGAGAAGAGGTGAGAAGAATATGAAAACTATACGTTTGTGATCTCCAGCTCACCAGTGGAACATGGTGATTCTTTTACAGATTCTTGCTGTAACTCCTCTGTTACTCCCCTCAAAGGCCAGCTTTTTCCACCCCTGTAGGAAATTCCTTTCCTACACCCACCCCATTTATCTCATCCTCATGGCCCCATGGGAATTTCTCTGCTTCTGCCCCCACCCATCATCTCTTTCCTGCCCATTTCTCCTCCATCTTGGATGAAGCTACCCTCTTCCCCTGGTCCTGGTTCAGCCTTTCATCGCTGCTCAGTAACATGAACCCCCAAAAAGCCAGCCAGCAAAGCAGAGCAGGCCTGCCTAGCATAGAAAATGCCAGAATTTGGAGAACAAAAGTGCTTTTTTGGATAGGACTGTTTTTTGTTGTTGCTCATACAACACAGCTCTTTGTGATTAATCTACATTTAACATAGCTCCAATCAAAGTGATAAAGAAATATTTTTATTAAAATGATTTCCTTTTATGGCAAAATAAGCATAAGATTGACCATTTTAACTATTTTTGAATGTACAATTCAGTGGCATTAATTATATTCACATTGTTCTGTAATACAACCATCACCACCATCCATTTCCAGAACTTTTTCATCATTCCCAACTGAAACTTTATACCCATTAAACACTAACTCCCCATTTCTCACTGCCCCAGGCCCTGGTAGCCATTAATCTACTCTCTGTATCTATAAATCTGACAATTCTAGGTACCTCTATAAGTGGACTCATACAGTATTTGTCGTTTTGTGTCTGGCTTATTTCACTTAGCGTGATGTCCTTAAGTTCATTCATGTTGTAGCATGTGTCTGAATTTTATTCCTTTTTAAGGCTGAATCACGATTGTATGTATGTACCACATTTTATTTATCCATCTGTTGATGAATATTTAGGTTGTTTCTACCTTTTAGCTATTGTGAAGAATGCTGATATGCACATTGGGATATAACTATCTGTTTGAATCCTGGTTTTCAGTTTTCTTGGGTGTATACCCAGAAGTGGAATTTACTTAATTGTTCTTGAATAGGGAATACCTCTGTATGGTGGACAATATAAAAGGTACAAGAAGTCATAGAGTTCCCTGAGCCCCGACCTCCAAGTTCCCCTCCCAGGAAGCATCACTGTAACCAGTTTCTGTGACCTCTTCCCTGGAGAGACCATACTGTACCCATAGGCACCCTCTACACAGGCATGATGACAGCCATAAGCACTCTTCTACACTTTCCCTTTTTCCTACTTAACAATATTTCTTTTTTAAAAATTTAAAAATCTATTTATTTTTTTCTTCAACTTTTATTTTAAGTTCAGGGGTACATATGCCAGATGTGCAGGTTTGTTACATAGGTAAATGTATGCCATGGTGGTTTGCTGCACAGATCATCCCATTACCTAGATATTAAGCCCAGCAAATATTAGCTGTTCTTCCTGATGCTCTCCCTCCCCTAACAATATTTCTAAAAAAATCATTCCATAGCACCATTTAAAGAATATCCTCATTCTATTTAAAAGGTTCATCGTTTTCCAAAGTAGAGACAAAACTTGTTTTTCTTTCTTTCTTTTTTAAAATCAGTCCTTTATTCATGGACATTCAGGTTGTTTCCAATGTTTTGCCACTGTGAACAATGCTCGGATGATAACAGCCAGCATTTCCTGAATGCTTACCATGTGCCAGGCCCTTGTTAAAATCCTTCCCATGTATCATATTTAATTCTCACTACAACTGTGACATAAGCACAGGGAGGTGAGTAACTGTCCCAAACCACATCTCTGTTTTTGTCCACAG
Seq C2 exon
GTGGGAGTGTAAGATAACCTTCCAGATAAAGAGTTGCTGCTACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687-SLC4A5:NM_133478:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)