HsaINT0153468 @ hg38
Intron Retention
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr2:74338855-74342534:-
Coord C1 exon
chr2:74342458-74342534
Coord A exon
chr2:74338904-74342457
Coord C2 exon
chr2:74338855-74338903
Length
3554 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ATCTCTGTTTTTGTCCACAGGTG
3' ss Score
13.74
Exon sequences
Seq C1 exon
GCATCCCAGGATTTGGAATTCAGCTGTGAGCTCATGAGCTGATGGATGTTTCCAGGAGTACCCTGAAGACCACCCAG
Seq A exon
GTATGCTCTCCCCACCTCCTTTATTTTGGATGGACCAGTCTAAGGAGAGTCATCTTTTCCCACACCATTGGTGGCACTCAGTGAGTGGCTTGTTGCTTGACTGAATGCCTGCCCACACCCTCTCCAGTCAAGTTTATCTTGAGTAACTAAACACTTAGCAATGGAGACACTCATACATCTCCACTGCACTAGAAGTAGGGATGGTGGCCATGCCAACAAAGGAGATAACTTTAGCACAAAGGATGTCACAAGAAACAGATAGTAGAGTGTGTTCTCCAGTGTTATCATTTCCCAAACCAGAATCAACTGGTCTTGGGTTTCCTTCCCTCATCCTTCATCTGTAGAAAACTTTGTTTCTTGAGCTACTTCAGATCTACTTCCCTATCTTAAGAGGTGGGCTATGTGCTTCTTCTGCTAATTTATTATCTCAGAAGTACATAATTTGAGCAATTTTATATAGTTTTGAGGACAGGAGCCCTGTAAGAGTCTCTTACTCAGAAATGGATTCAGCTTGGTTTGAGGTTTAATAGGTCATTGCAATGCTCCCTTCTGGTATCACAGGACATAAGCTGGGTTGGGCGGAGTCCCCCTTTTGTGTCTTAGCCTTCCTCTCCTTACTCCAGAGTAAGAGCAGCCCTGATGGAAAAACAAAATTACCATCCATGCCTACTTCATTTCTGCCCCTCTTACTCTAAGTCTGGGCAATCCGCAACATCTTTTTATATTGGACTTCCTAGATCACAGACTCTTTTTTTAGGAAGAGTCAATTCAAGCCACCCAGGACTTATGATCCCTTGCTCTGTGTCGGGCACAGTGTGAGCACAGTAATGGCATGGGCTGCCTGATGTGGGGCAGTCCCTCTTGGTCAGCAATTCACTCAGCAGCCATCTCAGTGCCCCCTGTGTAAATTTGAGGCACTTTGCCAGGCTGTGGGAACAGTGTGGGGTTAAACAGCACATGGTCCTTGCCCTCAGAAAGCTTAAAATCCAAAGTCAGATACAAGGTTATTTAACAGATGCGTGTTAATTAACAATTAAAGCTAATGTGCACTGTTCCATTGAACAAACATGACTTATGTGGTAAAATCAGAAAGCAGCTTGATTTTTGTCTCTTACTGCTCTTTTACATTTACTCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCTAGGCTGGAGTGCAGTGGCACAATAATTGGCTCGCTGCAACCTCCACCTCCTGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGTGGTTGTAGGCACCCACCACCACGCCCAACTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGACCAGGCTGGTCTCGAACTCCTGACCTCAGGCGATCCACCCACCTCGGCCTCCCAAAGTGTTGAGATTACAGGCGTGAGCCACTGCACCCAGCCTCTTTTACATTTATTCGGTGGGACTAGCTCTTGCTTTGCCCCTGAATGGAATTTAGGCAAGTCACAAGGTTGTTCCAGCCACCCTTGGTCTCAGTCTCATTTTAATAATTATAATTTCCAGTCCTACCTAAAGATACCACTTCAATCTTGACTTGGAGTGGAGCCTCTTCTGGTGCTGCTAAAGAACAGAGGCCCGTGGTGGATGGTGGTCTGGATGGGGAGTCCCTGGTTTCCACTCTTCCTCACTTATTTAGCTAACCAGGGTCCTCAACCCCGTCAGGGTTGTTGCCTGGAAGAGAAGAGGTGAGAAGAATATGAAAACTATACGTTTGTGATCTCCAGCTCACCAGTGGAACATGGTGATTCTTTTACAGATTCTTGCTGTAACTCCTCTGTTACTCCCCTCAAAGGCCAGCTTTTTCCACCCCTGTAGGAAATTCCTTTCCTACACCCACCCCATTTATCTCATCCTCATGGCCCCATGGGAATTTCTCTGCTTCTGCCCCCACCCATCATCTCTTTCCTGCCCATTTCTCCTCCATCTTGGATGAAGCTACCCTCTTCCCCTGGTCCTGGTTCAGCCTTTCATCGCTGCTCAGTAACATGAACCCCCAAAAAGCCAGCCAGCAAAGCAGAGCAGGCCTGCCTAGCATAGAAAATGCCAGAATTTGGAGAACAAAAGTGCTTTTTTGGATAGGACTGTTTTTTGTTGTTGCTCATACAACACAGCTCTTTGTGATTAATCTACATTTAACATAGCTCCAATCAAAGTGATAAAGAAATATTTTTATTAAAATGATTTCCTTTTATGGCAAAATAAGCATAAGATTGACCATTTTAACTATTTTTGAATGTACAATTCAGTGGCATTAATTATATTCACATTGTTCTGTAATACAACCATCACCACCATCCATTTCCAGAACTTTTTCATCATTCCCAACTGAAACTTTATACCCATTAAACACTAACTCCCCATTTCTCACTGCCCCAGGCCCTGGTAGCCATTAATCTACTCTCTGTATCTATAAATCTGACAATTCTAGGTACCTCTATAAGTGGACTCATACAGTATTTGTCGTTTTGTGTCTGGCTTATTTCACTTAGCGTGATGTCCTTAAGTTCATTCATGTTGTAGCATGTGTCTGAATTTTATTCCTTTTTAAGGCTGAATCACGATTGTATGTATGTACCACATTTTATTTATCCATCTGTTGATGAATATTTAGGTTGTTTCTACCTTTTAGCTATTGTGAAGAATGCTGATATGCACATTGGGATATAACTATCTGTTTGAATCCTGGTTTTCAGTTTTCTTGGGTGTATACCCAGAAGTGGAATTTACTTAATTGTTCTTGAATAGGGAATACCTCTGTATGGTGGACAATATAAAAGGTACAAGAAGTCATAGAGTTCCCTGAGCCCCGACCTCCAAGTTCCCCTCCCAGGAAGCATCACTGTAACCAGTTTCTGTGACCTCTTCCCTGGAGAGACCATACTGTACCCATAGGCACCCTCTACACAGGCATGATGACAGCCATAAGCACTCTTCTACACTTTCCCTTTTTCCTACTTAACAATATTTCTTTTTTAAAAATTTAAAAATCTATTTATTTTTTTCTTCAACTTTTATTTTAAGTTCAGGGGTACATATGCCAGATGTGCAGGTTTGTTACATAGGTAAATGTATGCCATGGTGGTTTGCTGCACAGATCATCCCATTACCTAGATATTAAGCCCAGCAAATATTAGCTGTTCTTCCTGATGCTCTCCCTCCCCTAACAATATTTCTAAAAAAATCATTCCATAGCACCATTTAAAGAATATCCTCATTCTATTTAAAAGGTTCATCGTTTTCCAAAGTAGAGACAAAACTTGTTTTTCTTTCTTTCTTTTTTAAAATCAGTCCTTTATTCATGGACATTCAGGTTGTTTCCAATGTTTTGCCACTGTGAACAATGCTCGGATGATAACAGCCAGCATTTCCTGAATGCTTACCATGTGCCAGGCCCTTGTTAAAATCCTTCCCATGTATCATATTTAATTCTCACTACAACTGTGACATAAGCACAGGGAGGTGAGTAACTGTCCCAAACCACATCTCTGTTTTTGTCCACAG
Seq C2 exon
GTGGGAGTGTAAGATAACCTTCCAGATAAAGAGTTGCTGCTACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687:ENST00000377634:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains