HsaINT0153472 @ hg38
Intron Retention
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr2:74328120-74334177:-
Coord C1 exon
chr2:74334027-74334177
Coord A exon
chr2:74328187-74334026
Coord C2 exon
chr2:74328120-74328186
Length
5840 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CCCTTCTTGCCACCCAACAGGAA
3' ss Score
8.56
Exon sequences
Seq C1 exon
AGTGCTGACACCATCACAGTATGTTCCCTTCTCAACCCTGGACATGGTTCAGAAACAGCTAAAGCAGACAAGAATCTGGGGCAGCCAATATTGTACCACCTGCCAAAGCTTGGCACAAACAATCTGGAAGCCAAAAATTGCACATACTGTG
Seq A exon
GTGAGTACTGCCCAGCCTGTGGGGAACTTCTTGTGGGTAAAGGTTCTAGATAAGCCTGCCAGGGCCCCCAAATGAATCCTTAGTCCCATTAACAAGGGCCTAAGTCCCGCAGGCCTTTCCAGGGTAGGAAGCTGCTATTTTCTTCAAAGAATTTTGCCCCCATGCCATGGTCCTAGGTCAGACCTACCTAAATCCTTTCAGATGTCAAACCCAGGTAGGGTTCAGATGGCATTTAGCCAGGAGATGGAAGGGAATCCGTCCCAGTGAGCAGCCATCACTGTCCACCAGGTATCTGAAGAAAATGGAGGCACAGAGGTCAAACAGTCATCCCTCAGCATCTGCAAGGGATTGGTGCCAGGACCACCCGTAGATATCATAATCTGAAGATGCTCAAGTCCTTCACATAAAATGTGACCTATGCAATCCTCTGTTTATCTTAAATCATCTCTAGATTACTTCGAATACCTAATACAATGTAAATGCTATGTAAATAGTTTTTTATACTGTATTTTGGGAGTATTATTTTTTATTGTTGTATTGTTATTTATTTTTATTTTTTCAAATATTTTTGATCTGCTGTTTGTTGACTCCTTGGGTTAGGAACCTGTGGATATAGAGGGCCAACTGTACTAAGAATCTTTAGCTCCCTCTCCTGGCAGATCCCTGGCGAGTGAGGTGGGCCTATGTTGAGTGCTCCTTTTGCCTGAGTGAGAGCCTAGAACCAGAGACTGAATGCCCTAATCCAGGATTTCTTGATCATGGCACCATTGATAGTTGGGGTCAGATAATTTTTTTGTTGTGGGGGCCATCCTTGTAGGACGTTAGCAGCATTTCTGACCACTACCCACTAGAGGCCAGAAGTACTCTCCCTCCAGTAGTGACCTTCCCTCCAGTATAACCAAAATAGATCCAGACATTGCCAGATGTGCCCAGGGGAAGACACCTGTGGCTGAGGAACACTGGGGCCAGTTCTTTCCCTTTCCCCAAGACCAGTGCATGAGCCTCAGCTGTTACCACTCTGGTGGTGAGGAAGAGTTGACAGTATCCCCCAAGCATTTACTTCAGTGCCACAGCTGAGTGGCTGGCTTGGCATGTCCTTGGCTGTAACATGGAAGGAGGCCAGAGGACAGGGAGCAGAGAGAAAAGGGGTAGCCATATCTTCTCTCAACATTTTTTGGCTTACAAAACTAAACCACAGGGAAGGGCAGGGATGAGGTTGGCCATACACATCACAGGACTAGGTCTTTCTCTCCCTCCTCATCTCTCTCTCTCTTTCATGCACATACATGCGCACACACACGCACACACACACACACACACACAAATGGACACCCCTCTGCCATTCTGTGTATTGGCTTTTCTCTCTCCCACTGAAGACAGGCTTTTTCCAGAGACAAAAGAGTACTTTGTGCAGGAGGAAAAAGTTAACGAATGGACTGATTTTGCCCAAGAGATTGGCAGGGCAGGAATAAGAGGTTATGAGTATCAATGAGAGAAGAGAGGAAAGGATTCATTATGATGTCCAGACCAGAAGGGGAAGTAAATGAAGCCATGAGGAGCTGGTATATGGGGAGAAGAGGAAGATGCCTGAAGATCAAAGGTCTTCATGCAGTTGAAAAGCAGGAAAGAAGGGAGTCAGAGCTTGGGAAGTTATCCATTAAGAGTCCCAACATCTGACCAGAACTGTCAATGTATGTTTATTTTGCTTCAGCGATAATTTCACTTAGACACATAGAATCGTAGGGCAGTAGAGTTTCAAAGAAACTTAAGAGATCCTTGAGTCCAACCCAGTCTATGTGGACTCTTTTACTAATTCTTCAGTGCTGGACTTTGAGAATGAGACTTGTTCACAACCCCTCTGTGCTTAGAATCAAATGAGAAATAAGATATAGAAGTCCAGCAGCTGGAACTAAAATAAATTTATGACAGCTAAAGCTGATTGGAGAATGTGGTTTTGAATGTACAGTTGGGCTTCCTAATTCTTTCCCTCAGAATGAAACTTATCTACCCAGAACTGGAAGACTCCCCTATCCCACAACGCAAGAACCTGCCCTTCCTAGGGCAGGTTGAAAAGAAGAGGAGAGGAGGGAAGCACAGGCCTTCTCTGAGGAGGCTGTTCCCAGAAGGAGGAAATCCAGAAGAACCTGAGTCATGACATATGCCCATTTTATGTGCTCCAATTCTCCAAGCACACGAACCACTCATCCTCTGCTAGATAGCATGAGTTTAGAGGTAGAGCAGTAAGTGGAGAGTACTTTTCTCAAGGCTGCAGCAAGGACAGAAGTTCCCACTTTATAAGGTGAGGCAAAAGTGCTTGGAGGGAGAGAGGTAGATTTCCCCCTGACAAATGCCATTTAATAGAGCAAACTCTGCTCCAAGAACACTGAGGCCCAGAGAGGTGATTTCCCAAAGGTACCATGGCTCTGAAAGAATAAGGGTCTCCAGACTCCTAATGGTGAAATTTCACCATTTCACATGTGTAATCAAAGGAGGACAGGTTCTTCCACATTTATCAGCATAATAGCAACAACAATCTTCTATTTCTTCATGCACAAGGCCTTCTAACTCCTTCCTTCATCACTATCACTGCCTCCACATCCTCCATCTACACCTTGCCACCTCTATCTACACATCACACCCTCATCCACACCTCACCACTACCATCTACACCTCACTACCCTCACCTATACCTCACCACCTACACCTAAACCACACACCTCCATCTAGACGTCACCACCTCCATCTAGACATTACCACCTCCATCTAGACCTCACCACCACCATCTAGACCTCACCACCCTCACCTATACCTCACCACCCACACCTAAACCACACACCTCCATCTAGACCTCACTACCTCCATTTAGACCTCACCACGTCCATCTAGACCTCACCTCCTCCATCTACACCTCACCACCACCATCTATACGTCACTATCACCATCTACACCTCACCACCCTCACCTATACCTCACCACCTACACCTAAACCACACACCTCCATCTAGACCTCACCACCTCCTTCTAGACATCACCACCTCCATCTAGACCTCACCACCACCATCTACACCTCACCACCCTCACCTATAACTCACCACCTACACCTAAACCACACACCTCCATCTAGACCTCACCACCCACATCTAGACCTCACCACCTCCTATACCTCACCACCTACACCTACACCATACACCTCCATCTAGACCTCACCGCCTCCATCTAGACCTCACTGCCTCCATCTAGACCTCACCACCTCCATGTAGACATCAGCACCTCCATATAGACCTCACTGCCACCACCATCTAGACCTCACCACCCTCACCTATACCTCACCACCTACACCTAAACCACACACCTCCATCTAGACCTCACCACCCCCATCTAGACCTCACCACCTCCATCTGACATCACCACCTCCATCTAGACCTCACCACCACCATCTATACCTCACCAACCTCACCTATACCTCACCACCTACACTTACACCATACACCTCCATCTAGACCTCACCACCTCCATCTAGACCTCACCACCACCATCTACACCTCACCACCCTCACCTATATCTCACCACCTACACCTAAACCACACATCTCCATCTAGACCTCACCACCACCATCTACACCTCACCACCCTCACCTGTATCTCACCACCTACACCTAAACCACACATCTCCATCTAGACCTCACCACCATCTAGACCTCACCACCCTCACCTATACCTCACCACCTACACCTACACCACACTCCTCCATCTAGACCTCATCACCTCCATCTAGACATCACCATCACCATCTACACCTCACCACCCTCACCTATACCTCATCACCTACACCTATATCACACACCTCCATCTAGACCTCGCTACCTCCATCTAGATATCACCACCTCCATCTACACCTCACGACCACCATCTACACCTCACCACCCTCACCTATCTCTCACCACCTATACCTACGCCACACACCTCCTTCTATACCTCACCATCACCATCTACACCTCACCACCCTTGTCCACACCTCATCACCATGTATACCTCATACCTCCATCTATACTTCACACCACCATACACTACCTCACCATCTCCATCTCCACCTCACACCTCTGTCTACAACTTACCACCTCCATCTACATCTCATCACTTCCATGTAAACCTCACCACCTCCATTCACATATCACATTTCCATCTACACTTCACCCCCCATCTACACCTCACACTTCCATCTACATCTGATCACTTCCATATACACCTCACCATCTCCACCTTACACCACCGTCAATACCTCAGAACCTCCATCTATACCCCATACCACCATATACATCTCACCACCTCTCTCTACATGAACCTCATCATCTCTGTCTACACCTCACACCTCCATTTACACCTCACACCACCTCCATCTACACCTCACCATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAGATGGAGCCTCGCCGTGTTGCCCAGGCTGGAGTGCAGTGGCACTATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTACCACCACATCTGGCTAATTTTGTATTTTTAGTGGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGAACTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACGGGCGTGAGCCACCACACCCGGCCAATTTACTATCTTTATCTACATTTCATTACCTCCATCTACACCTCACACCTCTATCTATACCCCACATCTCCATTTATACCTCATCACCTGCATCTGTACTTCATAACTTCACCTACACTTTACACCTTCATCTACATTGCCACCGTTTTACTGCTACTTCTACAACCAACACCTCTGCCTCTATCATTTTCTCCATCATTCCTACCACCTCTCCTTTTGTCAGCAGAGAGCCAGCAGCCATCCTTTTGGCTGGAGTGACAGGTGTGAACTAGGAGCCTACCTGCATGGCTGTAGTCTAGAGAGGTCTTCAAGGTCTTTGAGGTTAAAAAAAAAATGTCTCTAGCTTTTGGTGTCACCTGATCTCTCCGAAAAGGTCACCTTGGAGCATTTTACAAAGATTGGGTTAGAGATGCCTAAAAATAAGTACACATGTTTATGTAAACTCATTGACCACAAGTACAGACTGCCACTATTTCCAAGCCATGCCCTAATCTGACAGCTGAACATTTAGGTACTTGCAATGTGATAAGATCCTTTATCAACATCTCAGCAGTCCTCAAAGCTCTAACAACTTAAAAGTTGGAGACATTAAAGTGAGCTGTAATTTTGAGCCAACTGGGGTCATGCCAGTACATAACAACAGGCCCACGTATCTGTAGGTTCCTGGAAATGCCACTGCCCCTCTCTGGGCCTCAATTTTTCATTATATAAAGTGGGCAACCTTGAGATAAGGCTGGATTCTTCAAGTTCTCTTCCAGCTCTAACATCCCTCCAAGACAGAATCCAAAAAGAATCTGGGTTAAAAACTATGCAGGGAGATAAAATAGCATTTCAGAATCAAGGCTGGAATATACCACTGCCATAAAAAGATCACCAAGTTAAAATTCAAGAAGAAATTTAGAGCAAAGGCATCTGCCTATGATCATGGCCAGCTCTATTCAGACCCTGCTATACCCTGGTCTGTCAGTCAACCAGGCATCCATCCCTGACCCTGCAGGAGCGTCCCTCCCCCCACCTTGGTCACATGGCTGGCCGCCACTGAGCCTCAGAAGTCAATCTCCAATGCCCCAAATACTGTTCAGCCTGGAAACCACAGAGAGCCCTTCTTGCCACCCAACAG
Seq C2 exon
GAACAGAGCAAGTGGTTCTGGCCTCCCTGGGATTTGGATCCTGGTTTCCAGAGCTAAGAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687:ENST00000377634:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains