RnoINT0135441 @ rn6
Intron Retention
Gene
ENSRNOG00000016932 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:RGD Symbol;Acc:2319689]
Coordinates
chr17:10618256-10621715:-
Coord C1 exon
chr17:10621456-10621715
Coord A exon
chr17:10618504-10621455
Coord C2 exon
chr17:10618256-10618503
Length
2952 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTATCTCTTTGTCTCTACAGAGC
3' ss Score
10.56
Exon sequences
Seq C1 exon
GCTGCTCTGCTAACCCACTGTCTCAACAGTCTGAATTTTCCTCAGAAAAACGTCCTTGGCTCACAGTCTCAAACAGCTCAGCCAGAGAAGAGAGATCACTGCCACAGTCTGCCACCCCTGGCTCTGCCCAGATACAGGGACAAATAGCACAAGCTGGGGTGTACAATAGGCCTTGCCTGCATAGACTGAAGTACTTCCTACGGCCTCCAGTACATCATCTCTTCTTCCAGACGTTAATACCGGATAAAGACACACGAGAG
Seq A exon
GTAAGCTAGCACACTCGCCCCCTTGGGGACTGAGTCTTCAATGACGTTACAGTGACTAGAGTAACGGGCCAAAGATAAACAATTTTTTTTTATCTTTTCCCAACTTGATGGGGGGAACTAGAACTGTATTCAGATCTCGGCCCACACCTAAAACCCTGTACAACCAGGGCACTAAATGAGGTGATGTGTATGAAGTTCGTGTTTGTATCTAATTTGTCACTGGCCTTCATCAAAATCTTGTCTTCCGCCCCTTCATCCTCCTCTTCCTGAAGTCCATACATTTCCCATATCACAGGGAGAAGACTCTTGTCACTTCAATGCCTCAAATCATTCCTTAGAATTTAGAAGTAGAAATTCAGTTTTAAACTTTAATGAGGATACCATTTCCCATTTGAGGACTTAATTAGCTATATATGGACAAAAATGTTACCATCTCGTAGCACGAAGCCTTTCTGTTATCCAGAACTCCCCCTCAGCCTGAAAGACCCCCTCCCAGAAAGGGAATTGTACCAGCCCAAGGCCCTCAACTATAGAAATAAAAAGTAAGTTTTTAGATACACAGACTCAGAACTAAAATAAGCCTGGGAAAGTTCAGATGTGTCCAAGCTTTGTGGGACAAGCTGACCCATCATTTAGACGAAACAGACCATAAAAGAAAACAAAATGCAGAAACCAGACTAAATTATGGGCACTGCTCCATGGGCCACCTGGCAGGAAAAAGAAACAGTCCCAGACCCCCTGGAAGCCCTGACCACCATGTACTTTTGCTAACTCACTGTTATGATTATAGCCAAAATAGGTAACATACACGTATGCCTCATTTACTCCACCAATCACATCCCTGTAACCATGCATCTGCTTCTGTAAGCCTGCTCCTGCTCCCCAGTACCCTATAAAAACCCGTCCCTGGTTCTGCTAGGCGCGCCAGCCTTCCGAAGTGACTGGGACGCCCACAGATACCTGTGCTTCCTGATCAATAAAAATCCTCTTGCAGATTGCAGCCTGTGGACTCGGACTGGTCATTGGGCTCGAGGGTCTCCCTCCTGAGGGAAGATTCTCTCTGAGAGTCTTACCACAAGCCTTTATATCTGTTTAAAGTGGTTCCAGGCCAGCAGAGTGGCTCAGGAGGTGAAGGCACTTGCTGCCAAGCCTCACTCACAACTTGTGTTCTACGGCCTGGACCCACATGATGGAAGCAGAGAACTGATTCCTATACACTGTCCCCTGACCCCGTATTTGTGGGATTCAGTTGTCCTCATAAACACACACACACAAGGAAATATGTCAAACTGAAAAGTCAAAGAGGAAGGCTGGAAAGAGATCTCTCCATGTATTCCCTTCCCATTGCCTCTCTATACATGACTGTTTCCATCTGTACATGACCGTTTCCAGCCACGCATGACCTTTTCTAGCCACACATGACCTTTTCTATCCATGCATGACTGTTTCCATCTATATGTGACCGTTTTCATCCATACGTGACCGTTTCCATCCATACGTGACCATTTCCAACCATACATGACTGTTTTCATCCATACATGACCGTTTCCATCCATACATGACTGTTTATATTCATACATGACAGTTTCCATCCATACATGACCATTTCCATCTATATATGACCGTTTCCATCCATACATGACTGTTTCCATCCATACATGACCGTTTTCATCCATACATGACTATTTACATTCATACATGACAGTTTCCATCCATACGTGACCGTTTCCATCCACACATGACCGTTTCCATCCATATATGATTGTTTCCATCCATACACGACCGTTTCCATCCATACATGACCGTTTTCATCCATACATGACCGTTTCCATCTATACATGACTGTTTACATTCATACATGACAGTTTCCATCCATACACAACCGTTTCCATCCATACATGACCGTTTCCATCCATATATGATCGTTTCCATCTATACATGACCGTTTACATTCATACATGACCGTTTCCATCTATACATGACCGTTTCCATCTATACATGACCGTTTCCATCTATACATAACCGTTTCCATCTATACATGACCATTTCCATCTATATATGACCGTTTCCATCATACAAGACCATTTTCATTCATACATGACTGTTTCCATCTATACTTGACCATTTCCATCTATATGACTTTCCATCTATACATGACTGTTTACAGTCTTACATGACCATTTACATTGTTTTTAGTAATTAGGATTTTTTAAAAATATATATGTATTTGTTATTGGGTTTGTTGTTTATAGAAGGTAATGGTTAAAAACCATGCATGGTGGTACATGCCTGTAATTTTAGTGCTTAGGAACTAGAGGCAAGAAGATCAAAAGTTCAAAACCAGCCTCTACTACAAATTCCATGTCAACCTGGGCCATACGATACCCTCTCAAATAGGAAAAAGAACGGGAGGGAGGAAGGGAAGAAAGTAGTAGTCCTTCTTCTAGCAGCACAACGCTCGGGCTTTCTTACCAATACAGTGTCCCTACCCCTAAGTCTCTTGACCTACAATCCTAGCGCATAGAAGGTGGAGGCAGGAAAACCAGGGACTCAGAGCCCCTCTCAGACTGCTCTTGGCTCTTTGGTTTATTCCTTTTTGTTACATTTGGACATGGATGAAGTCATGTCGTATGTAAAATTTAGAATTTCTCTCTTAACTTCCCCACGTCATTAAGAAGTTTTTTTTTTGTTTTGTTTTGTTTAAGAAGAGCTTTGTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGTCCCCAGCTCCAAAAAAAAGAACCAAAAAAAAAAAGAAGAAGAGCTTTGTTTCTCTTTAATAAAATATTTCAAATGCATAGAAAACATTGCTGTTTCAACCTATTGCAGAATGTCTTGCTTTTAGGAAGGGTAGAACCCATCCTGATGCGTATCTATCTCTTTGTCTCTACAG
Seq C2 exon
AGCAAGGGTCAGAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTGACAAACACTATTGAGGAAAACTTCCCCTTGGGAACTGTGCAGTTTTTAATGGACTTTGTTTCACCCCAACATTACCCACCCAGAGAAATTGTGGCTCACATCATCCAGAAAATCCTGCTGAGCGGCTCTGAGACTGTGGATGTCCTCAAGGAGGCCTACATGCTTCTCATGAAAATCCAACAGTATGAATCGTTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016932:ENSRNOT00000022980:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=NA C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]