BtaINT0133170 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034998 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr10:5005886-5010171:-
Coord C1 exon
chr10:5009666-5010171
Coord A exon
chr10:5006119-5009665
Coord C2 exon
chr10:5005886-5006118
Length
3547 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTTCTTTTTATCTCTACAGAAC
3' ss Score
11.91
Exon sequences
Seq C1 exon
GAGATGTGCCGCCGTCACCAGGAGATGCGCCGCCGTCACCAGCAAGTGTACCGCATTCATCTAGAGAAGTCTCATGCTTATCAGGAGATGCCCTTCGTTCACCTGGGGACATGTCACGCTCATTGGTAGACATGCCACCCACAGTTGGACAGTTGGCTCATTTACCAAAAATCAGGCCTGCCTCTCCCCAGAATGACATACAGAACCATGACACCCCTATGGATGTCTCGGCTCCATCCTCTCCAAGCTCCTCTCCCAGCCCACAGTCCCCAGAGTTTGAGACTTCCTTAGAGAAAGTTCCTTGGCTCTCTGTCACAGAAAATCCAGCCAGAAAAGAGAGATCACTGTCAGAGCCTGTCAACCCCGGGTGTGCCCTGATACAGACACAGATACCGCAAGGCGGGTTGTACAACAGACCGTGCCTACATAGACTGAAGTACTTCTTACGACCTCCGGTGCATCACCTCTTCTTCCAGACACTAATACCAGATAAAGACACAAGAGAG
Seq A exon
GTGAGCTAACATGCCTTCCTTGGGGATCAAGTGTCCTTTGTACAGGCCTTGTATATGCTCCAGGGGGTCCACACATGAGAGAACAGGACCAGTTGAGTTTCACATTGTTAGAAATGTGCACTAAAGAACTGATGCCATCCCATGTAGAATCAGGTCCGGGTTCAAATTCAGCCTCACACTTAGAAACCAGCATTGGAGACATCACTTTTTGTAGTTCAGTCGCTAAGTCATGTCTGACTCTTTGTGACCCGATTGACTGCAGCGTGCCAGGCTCCTCTGTCCTCCACTATCTCCCGAAGTTTATTCTGATTCATGTTCATTGAGTAGGTGATGCTATCTAACCATCTTATCCTCTGGTGCCCCCTTCACCTTTTGCCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCGACTCTTTGCATCAGGTGGCCAAAGCATTGGAGTTTCAGCTTCAGCATCAGTTCTTCCAATGAATATTCAGGACTGATTTCCTTTAGAATTGACTGGTTTGATCTCCTTGCAGTCCAAGGGACTTTCAATAATCTTCTCTAAGACCACAGTTCAAAAGCATCAGTTCTTTAGTGCTCAGCTTTCTTTGTGATCCAACTCTCACATCCATCCACGATTACCGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTGGGCAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAGCTTTTCTTCCAAGGAAAAAGTGTCTTTTAATTTCACAGCTGCAGTCACCATCTGTAGTGATTTTGGAACCCCAGAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCCCATCTATCTGCCTTGAAGTGATGGAACCAGATGCCATGATCTTGGTTTTTTGAATGTTGAGTCTTAAGTCAGTCATTAGGGAACTGCAAAAAAAAAAAAAAAAATCACATCTACTAAGATGGCTCTAATAATATTTTTATTTAAATATAGTTGGTTTACAATATCATGTTAGTTTCAAGTGTATAGCAGAGTGATTCCATTATTTTTTCAGATTATACTCCATTATAGGTTTTCACAAGATGTTGAATATAATCCCCTATATAGGGGTTTCTATATAGAAAACCCTCCAATGTCCCCCTCCAATGCAGGGGACATTGGTTCAATCCCTGGGTGGGGAACTGATATCCCACATGCCATGGGGCAACTAAGCCCATGTGCTGCAACTCCTGAGCCCATATGCTGTAGAGCCCACATACCACAACTAGAGAGAAGCCCATGTGTTGCAACTAGAGAAGCTCATGCACTGCAACTAATAGGGGTTTCTATATAGAAGCCCCTAAAAGCCGGTTTCTAAGCTATATAGTAAATTCGCCCAGTAACTTCTTAGCCAGGCTCTATGCTGCCACTTCATTCCTTAATTAAGGACCTTAATTCCTCTGAGTCTTTCTCTTTAGCTCTAGAATGGGTCATAACGCCTGTATCATGTCATTGTTTGGCTTAAAGGTAAACACATAGACACATGAAGCAACCTCTCAGGGTTTATAGGAATGTTATATGAATAGTAGTTCCCCTTAAGGATAAGGGCATTAGAACAATTTATAAACCTTATCTAAAATTTGTAGAGCTCTCCATTTGTAGGCAAGATCAGTTCTGGGTGTTCTTTGGAAGGACTGATGCTGAGGCTGAAACTCCAGTACTTTGGCCACCTCATGCAAAGAGTCGACTCATTGGAAAAGACCCTGATGCTGGGAGGGATTGGGGTCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGATATGAGTTTGAGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGATTCGTGGGTTCGTAAAGAGTCGGACACAACTGAGCGACTGAACTGAACTGAATGAATAATACAGTTTCAAGATCATAAAGTGCATCACACGTAAAATAGTCACCAAAGCAAGATTTTTGTTCTTCTCTTGCTCTTAATTCTTGTTACATGCTATTTACAGTGTTGGTTTCTCATTAGTGAGATCAGAGGAGTTACACTCAGGTGGCTTGAGACATAAGAAAGCTAGCTGGACTTCTTTCCTCCAAAATGCTAACTGCCCTCTCCCTAGAAGGGCAATTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCTGACCCTGTGCGACCCCATAGATGGCGGCCCACCAGGCTCCCTCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAGTGCATGAAAGTGAAAAGTCAAAGTGAAGTCGCTCAGTCGTGTTCGACTTTTCACGACCCCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATCGCCTTCTCCAAGAAGGACAATTCTAGCCATCACTATTTTACTGTTACACATAAACTGTCAAAATTTTGTCTGGTATTTCAAAATTAATGCTTATTCTCAGATTTTGAAATGCTTGCTTGCTTAGTATAAAACATTTTAAAGTATATAATGTTAAAAAATAATTACCCACATGATGTTATCAATCAGCATTTATTAATATTAATAGTTGGGTATATTTCCTTCCTTTTGGCCTTTTTGTAGGCACTTTAAATTTTTTAATAACTGGGAGTTTTAACAAAAATATATTTATTATTGTTGGTTTTGTTGTTTGTAGAGAGTATGAATGTAGAGGGTAGCACTGAAGTAATAGCACCATATGAAACCAACTTCTGTCGCATGACAAGTACTTTCTCTCTAAATCTGTTTCCTTATGTATGAAATAGGAATAATAATAACATGTATTTCTCAGAGTTGTGAGAATTAAGTGAGAATGAATTAGATGTTAAAAAAATTATTGTTATTATACTATTCCCATATCAGACATTTGTTTTTCTTCTGATTATTTGTCTATTACAGAAAAAGTGAAAAATATAAAGGTACATACAGAGGAAAAAGTATCCATCATTTCACCACCTAGATAATGGAAAGTTTTTTCATACACTCTCAGTCTTTATGTGCATACTGTTTGAGGGTAGGGGCAAGGGGTGAAGCAGCTTAATATTTACTGTTGACTAAAAAAAAAAATCAACAGAATTAAATTCTTCTAACAATAAAACATATTTAAAACATCTTTCTTCATCTTTTTGTTTTAGTATCTGATATAGTATCATAACTACCCCTAAATATCTTACCACCCTCACTTCAGAAGCAACTTAGGCTAGCTCTTGATTCTTGTACTTTCCTTTCTATGCTATATTTTAGTAGATGAAGTCATGTTTACATGTAGAACTTTGAATTCTTATTTAACTTAATATAAGCATTTCCCATATCATTAGAAGTTTTTTAGATAAGGCTTTCCAATCTCAGTTTTTCTAATTATGAATATTTCAAATGCTGTCTTCAACTTTTTCTAGGACCTCTTGCATTTTTGTCTATAGAAACCTATCCTAATTTATTTTCTTTTTATCTCTACAG
Seq C2 exon
AACAAGGGTCAAAAATTAGAACCTATCCCTCATCGAAGATTAAGGATGGTAACAAACACCATTGAAGAAAATTTCCCCTTGGGGACTGTGCAGTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCGCCCCGAGAAATTGTGGCTCACATCATCCAGAAAATCCTGCTCAGTGGCTCTGAGACTTTGGATGTTCTAAAGGAGGCCTACATGCTTCTCATGAAAATTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034998:ENSBTAT00000020753:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=NA C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development