MmuINT0003447 @ mm9
Intron Retention
Gene
ENSMUSG00000043183 | 4732471D19Rik
Description
RIKEN cDNA 4732471D19 gene [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54625331-54629897:+
Coord C1 exon
chr13:54625331-54628033
Coord A exon
chr13:54628034-54629664
Coord C2 exon
chr13:54629665-54629897
Length
1631 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTATCTCTTTGTCTCTACAGAGC
3' ss Score
10.56
Exon sequences
Seq C1 exon
GACTTCATTGACTTAACTAGAGAAAACCGAGCAAGGACAAAAGACCGGAATGGACTCTGTGTGATTGATCTAACAAGAAATGAGGAAGAAAATAGGCCTATTGCCACTCTTGATTTGACTTTAGAACCTGTAGCTTCCTCTCAGAAGGAGCCAACCAGTCTTCAGACATGTACCAGTCTCTCGGGCAAAGAAGTGATGGAAGCCCATGAAGATAGAGGCTCTCAGCCTGCAGCACAGAGAATCATTAACAATGATCCTGTAGATTTGGATTTGCTAGAGGAAAACCTGTTTGAAGGTTCTCGACCCCCTACATCTATCAGCCAGGACTCTGTTTATCCACCAGAACCAAACTGTAGCTCAATCACATATAAAGGTGACCTCAGCTTCTTGACAAGCCTACAGCTCTCTTCAGATGTTAGCTCCTTCTCCTCCACAAGCAATCAGAGGGCCTCTTTGCCATGCCCACAGCAAGATGTGCCTTGTCAATCACAAGGCTTGCTATGCCCGCTACAGGCCTTATCATGCCCACAAACAGCTTCACCATGTCCACCACGAGCTTCCTCATGCCCACCACAAGCCCTGTCATGCCCACCTCAAGCTTTGTCATGCCCATCACAAACTTTACAGTGCCAACTCCAAGCTTTGCCTCAACCACCTCAAGAAGTGCCATGCTCTACCCAAAATGTACCGTGCCCTCAGCAGAATATGCCAAGCACACCTCAAGGCTTATCATGGCATCCTCGACACACCCTATACCCATATCAAGACACTCTGGGCCTACCTCAAGATGTTCCAGGCCGACCTCAAAACATGTCATATCCACAAGATGTGACACAACTGCAAGACATGCCATGGTCACTACATGACATGCCACTGTCACTACAAGATGTGTTACAGTCACTGCAAGATGTGCCACCATTGCTGGGAGATGTGCCGCCATCACCAGAAGTGATGCAGTTACCAGGATATGTGACACAGACATCAAGAGATGTGATTCAGTCACCGGCAGGTGTGACACAGTCACTAGGAAGTATGATGCAGTCACCAGGAAGTGTGACCCAGTCACTAAGAAGTGTGATGCAGTCATCAGGAAGTGTGACCCAGTCACTAAGAAGTGTGATGCAGTCATCAGGAAGTGTGACCCAGTCACTAAGAAGTGTGATGCAGTCATCAGGAAGTGTGATGCAGTCACCAGGAGGTGTGACACAGTCACTAAGAAGTGTGACGCAGTCACCAGGAGGTGTGATGCAGTCACCAGGAGGTGTAATGCAGTCACCAAGAGATGTGATGCAGTCACCAAGAGATGTGATGCAGTCACCAAGAGATGTGATGCAGTCACCAAGAGGTGTGACACAGTCACTAGGAAGTATGATGCAGTCACCAGGAGGTGTGATGCAGTCACTAAGAAGTGTAATGCAGTCATCAGGAGGTGTGACACAGTCACTAAGAAGTGTGATGCAGTCACCAGGAGGTGTGATGCAGTCACCAGGAGGTGTGACACAGTCACCAAGAGGTATGATTAAGTCACCAGGAATGATGCTGTCACCAGGAGATGTGATACAGTCACTAAACAGTGTGCCACAGTCATCAAGAGATAGGATGCAGTCAGCAGGACATGTGCCATCAGCATCAGGAGATGCAATACAATCACCAGGAGGTATGTCACCGACATCAAGAGATAGGATGCAGTCACCAGGAGGTGTGTCACTGGCAACAGAAGATTCGATACAGTTACCAGGAGGTGTGCCACTATCATCAGATGTGATACAGTCACAAGGAGGTGTGCCATTATCATCAAAAGATAGGATGCAGTCACCAGGAGGTGTGCCACCATCATCTGGAGATATGATACAGTCACAAGGAGGTGTGCCACAATCATTAGGAGATGCAATACAGTCAGCAGGAGGTGTGCCACAATCATCAGGAGATGCGATACAGTCACCAGGAGGTGTGTCACTGGCAACAGGAGATTCGATACAGTTACCAGGAGGCGTGCCACTATCATCGGGAGATGTGATACAGTCCCAAGGAGGTGTGCCACGGTCATCAAGGGATAGGATGCAGTCACCAGGAGGTGTGCCACCATCATCTGGAGGTGTGATACAGTCACCAGGAGGTGTGTCACCAGCATCAGGAGATGCAATACAGTCACCAGGAAGTGTGTTACCGGCATCAGGAGATGCAATACAGTCAGCAGGAGGTGTGTTACTGGCATCAGGAGATGCAATACAGTCACCAAGAAGTGTGCCACAGTCACCTAGCGGTACATTGCGGTCACCAGGCAATATGTCAGAGTCACTTGGAGATACACCAAACTTATCAGGAGATGTGTCAAACTCACCACAAGCATTATTGGACTTAGCAAGAGACAGGCCGAAGTCTTCCCCGAATGATGTGCAGAATCGTGATACTCCTATGGATATCTCAGCTTCATCCTCTTCAAGTTGCTCTGCTAACCCACAATCTCGACAGTCTGAATTTAAATTAGATAAAGTTCCTTGGCTCACTATCACAGATAGCTCAGCCAGGAGAGAGAAATCACTGCCACAGCTTGCCAACCCTGGGTCTGCTCAGATACAAGGACAAATACCACAAGTTGGGGTATACAATAGACCTTGCCTGCATAGACTGAAATACTTCTTACGGCCTCCAGTACATCATCTCTTCTTCCAGACATTAATACCAGATAAAGATACACGAGAG
Seq A exon
GTAAGCTAACATACTCACCCACATTGGGGGCTATTTCTTTGATAATGTTATCATGATTAGAGTCCATGCCAGAGAATGGGCCAAAGATAAACAAAATTTTTTTTTTAATTTTCCCCCAACTTGAGGGGGGAACTAGATCTATGTTCAGATCTCAGCCCACACTTAAAACCCAGTGTGCAAGTCACTTTTCTTTGTGAGCCTTGGCCTCCCTATTTGTAAAGCAGAGGTAAAAACACGACTCAGGGCACTGAATGAGGTGATGTGTGTGAAGTGCATGTTTGTGTCTGATTTATCATTGGCCTTCATCAAATTCTTGTCTTCCATTCCTTTATCCTCCTCTTCCTGAGTTCTATACATTTCCCATATCAACAGAGAAAAGACTCTTGTCACTTCAATGCCTCAAATGATTCCTTAGAATTTAGGAGTAGAAATTCAGTTTTAAAATTTTAATGAGATTACCATTTCCCATTTGTCGTCATTGACCTATGAGAACTTAATTAACTATATATAGACAGAAATGTTACAGTCTTTCACGTGAAACCTTTCTGCTATCCAGAACCTCACCCTCAACCATGACATTTGTTTAAAGTGGTTCCAGGCCAGCAGAGTGACTCAGGAGGCAATGGCACTTGCTGCCAAGCCTGACAACTTGTATTCTATGGCCCAGACCCACGTGATGGAAGGAGCCAACCAACTCCCATAAATTGTCCTCTGACGCTGCAGTTGTGGTATGCACTCATAAACACAAACACAGGAAATATGTAAGTCAAAAAGGCATTCTTTCTCTGCAGGCGCCACACTCACATGCACATTTCTACACCTAGACATGCGCATACATAAAATAAGAATGAATGAATCTAAAAACAGATAATCTAATGTGTTTAAAGTCACCCATCATGCTCTCAGACAGCATTTATTATAAATAATTCCATGTATTCCCTTTCCAATTGTCTTTTTATATATGCTCATTTAAACTTTTTTAATAATTAGAATTTCTTTTTAAACATATGTATTTGTTACTGGTTTTGCCATTATAGATGTAATGGTTAAAAGCCATGCATGGTGGTACATGCCTATAATTTTAGTGCTTGGGAGCTGGAGGCAAGAGGATCAAGAGTTGAAGACCAGTCTCCACTACAAACATACTAAATTCCATATCACCCAGGCCATGTGACACCCTCTCAAAGAGAAAAAGGAAAGGGAGGAAGGGGGGGGGGAGAAAGTGGTGTTCATTCTTCCAGCAAGACAACAGGCTCAAGTTTTCTTATCTGTATTAAGATATAGACCTTTGTCCCTATCCCTAAGTATCTTGGCCTATAATCCTAGCATGTAGAATATGGAAGCAGGAAGATCAGGAACTCAAAGCCCTTGCTCTTGGCTCTTTGGTATTTTCCTTTCTGTTATATTTGAATATGGATGAAATCATGTCATGTGTAGAATTTAGAATTTCTGTCTTTTAATTTCCCTACGTCATTTAGACTTTTTTTTTAAGTAGAGCTTTCTTGTTTCTCTTTAATAAAATATTTCAAATGCATAGAAAACTTTGCTGTTTTCAACCTGTTGCAGAACCTCTTGCTTTTTAGGAAGCGTAGAAGCCATCCTCATGCCTATCTATCTCTTTGTCTCTACAG
Seq C2 exon
AGCAAGGGTCAGAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTGACAAACACTATTGAAGAAAACTTCCCTTTGGGGACTGTGCAGTTTTTAATGGACTTTGTTTCACCCCAACATTACCCACCCAGAGAAATTGTGGCTCACATCGTCCAGAAAATCCTGCTCAGTGGCTCTGAGACTGTGGATGTCCTCAAGGAGGCCTACATGCTTCTCATGAAAATCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183-4732471D19Rik:NM_176987:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=NA C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGCCAGGAGAGAGAAA
R:
TTTCTGGACGATGTGAGCCAC
Band lengths:
348-1979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: