HsaINT1041609 @ hg38
Intron Retention
Gene
ENSG00000170085 | SIMC1
Description
SUMO interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr5:176289654-176295262:+
Coord C1 exon
chr5:176289654-176290955
Coord A exon
chr5:176290956-176295029
Coord C2 exon
chr5:176295030-176295262
Length
4074 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTTCTTTTTAATCTCTACAGAAC
3' ss Score
9.64
Exon sequences
Seq C1 exon
GACTTCATTGACTTAACTAGAGAGACCAGACCAAGGACAAAAGATCGCAGTGGACTGTATGTGATTGACCTGACAAGAGCTGAGGGAGAAAATAGACCTATTGCCACTCTTGACTTAACTTTAGAACCTGTCACTCCTTCCCAGAAGGAGCCAACCAGTCTTCAGACATGTGCCAGCCTCTCTGGCAAAGCGGTGATGGAAGGGCACGTGGACAGAAGCTCTCAGCCTACAGCACGGAGAATCATTAACAGTGATCCTGTAGATTTGGACCTAGTGGAAGAAAACACCTTTGTAGGTCCCCCACCCGCTACATCCATCAGTGGAGGCTCTGTTTATCCAACAGAGCCTAATTGTAGCTCAGCCACATTCACAGGTAACCTCAGCTTCTTGGCAAGTCTACAGCTGTCTTCAGATGTTAGCTCCCTCTCCCCAACAAGCAATAATAGTAGGAGCAGCAGCAGCAGCAGCAATCAAAAAGCACCCTTGCCATGCCCACAGCAAGATGTATCTCGCCCACCACAGGCCTTGCCGTGCCCCCTGCGACCTTTGCCATGCCCACCGAGAGCCTCACCATGTCCACCACGAGCCTCCTCATGCCCACCACGAGCCTTGTCATGCCCATCACAAACCATGCAGTGCCAACTACCAGCTCTAACTCACCCACCTCAAGAAGTGCCATGCCCTCGGCAGAATATCCCAGGCCCACCTCAAGACTCTCTGGGCCTACCTCAAGATGTGCCAGGGCTGCCTCAAAGCATATTACATCCACAAGATGTGGCATACCTGCAAGACATGCCACGGTCACCAGGAGATGTGCCACAGTCACCAAGTGATGTTTCACCGTCACCAGATGCACCACAGTCACCAGGGGGCATGCCACACTTACCGGGAGATGTGTTACATTCACCTGGAGACATGCCACACTCATCAGGGGACGTGACACACTCACCTAGAGACATCCCTCACTTACCAGGAGACAGGCCTGACTTTACCCAGAATGATGTACAGAACCGTGACATGCCTATGGATATCTCAGCTCTGTCCTCTCCAAGCTGCTCTCCCAGCCCACAGTCTGAAACTCCCTTAGAGAAAGTTCCTTGGCTCTCTGTCATGGAAACCCCAGCCAGAAAAGAAATATCACTGTCAGAGCCTGCCAAACCTGGGTCTGCCCACGTACAATCACGAACACCACAAGGTGGGTTGTACAACAGACCATGCCTGCATAGACTGAAGTACTTCTTACGTCCTCCGGTTCATCACCTCTTCTTTCAGACGCTAATACCGGATAAAGACACAAGAGAG
Seq A exon
GTGAGCTAACATCTTCCCTCAGGGATTAGGTGTCCTTTCCCTAGGCCTAGGAGAAGGTCAGTGTGACTGGAGTCCATGCGTGAGAGGACAGGTCAAGCATAAATGAAATTTCTTATCTTTCCTCCACTTGTGAAGACCCATTCAGTGTAGAGGCCCAGATCTGGGTTCAAATTTTAGCCCCACGCTTAAAAACTGTCACTTTACTTTTTTTTTTTTTTTTTTTTTTGAGACCGAGTCTTGCTCTGTCTCCCAGGCTAGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGAGTTTCTTCTACCTCAGCCTCCCTAGCAGCTGGGACTACAGGCGCATGCCGCCATGCCCGGCTAATTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCCGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGTCATTCGCTTGCCTCAGCCTCCCGAGTAGCTGGGACTATAGGCGCCCGCTACCACGCCCAGCTGATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACAGTGTTAGCCAGAATGGCCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCGCGCCTGGCACGCCCGGCTAATTTTTTGTATTTTAGTAGAGACAGGGTTTCATTGTGTTAGCCAGGATGGTCTTGATCTCCTGATCTTGTAATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCAGGGCACTTTACCTTTTTAAGCCTTAGCTTTCCTATCTGTAAAATGGAAGTAATAACATACCTCACAGGGTCATACGTGAAAGTGTCAGGGTGTCAGGCTCATCGTAGGCCTTATGTAAATTCTTATCTTCTAGCTGGATGTGGTGGCATGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACCTGAATCTGGGAGGCGGAGGTTGCAGTGAGCTGAGACTGCACCACTGCACTCCAGCCTTGGCCACAGAGCAAGACTCTGTCTCAAAAAAATAAATAAATGTTTATCTTCAACTCCTATGCTTTTCCCTTCCTGGTGCCCTTATTACAGCTTCTATATCACAGAGATAATAATACTCTATCACTTATGGGCCTCCAAAATTATTACTTGCTGACTTTGGGGGAGGAAATTCAATATTAAGACATGAGTGGGAATGCTCCTTTCCATTGGTCATCATTGATTTATGAGAAGTAAACTAGATGTGTTAGGGAAAATAACTGGCTAAGTTCCACCGTATGAAGTGTTTTTTAGTTATGTACATCCCATCCCCCATATTAAGAAAACCAGCTTGAAACAGTTCAGTGTCAAAAGGTATGCTCTCCTCATTCAAGCAGTGATCCAGGTAGGCAGGAGCCAAGGATTCACACTGATTTGACCTTGGAGAATGATTTTTTTTCTCTTTTTTAAAATTATTACATCTTCTAATATGTTGTAGGTCTTCTCCTTCTTTATGCCTCTGCCTGACCACTAGCTCATTCTTTTTTTTTTGGGACAGAGTCTCACCCTGTCACCCAGGCTGGAGTACAGTGGTACGATCTCAGCTCACTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCACAGCCTCCCGCGTAGCTGGGTTACAGGTGCCCGCTACCACTTCCGGCTTTTTGTACTTTTAGTAGAGACAGGGTTTCACCATGTTGTCCAGGCTTGTCTTGAACTCCTGACCTCAAGTGATCCGCCCACCTCGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCAGACAGCATTTATTATTGTGAATAATTTGATGTCTTTCCTTCCCAGTTGCCTTTTTATACATAGGCATTTTACATATTTTAATAATTGGGATTTTTAACATATACACATTATTTTTGTTGTTTATGGGGAGTAGGGGTTGAGAGAATGGCTCTGAAGTTTACGCCACGTGTGTTTGAAACCAGCTTCTGCCATTTGTTGTATGACAAATGCTTACCCTCCAAATCTGTTTCTTTATTTATGAGATAGGAATAATAATAGTATGTATTTCCTAAGATTATTGTAAGAACTAGTTGAGGATCAATTAAGTGTTCAGTGCTGGGCGCAGTGGCTCACGCCTGTAACCCCAGCATTTTGGGAGGCCGTGGTCGGTGGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGTGAAACCCCCTCTATAAAAAATTCAAAAATTAGCTGAATATGGTGGCACACACCTATATCCTAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAACTTGCAGTGTGCCAGGATCACGCCACAGTGCTCCAGCGTGGGCGACACAGCGAGACCCCATCTCAAAAAAAAAAAAAATTAATTGTTTAAGGCCAGACATGATGGCTCACACCTATAATCCCAGCACTTTGGGAAGCCAAGACAGTCTTGATCACTTGAGTTCACAAGTTCGAGACCAGCCTGGGCAACATGGTGAAACCCCATCTCTACTAAAAATACTAAAAAAAATTAGCCAGGCATGGTGGCACACACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATGGCTTGAGCCTGGGAGGCAGAGGTTGCAGTGAGCCATGATCATGCCACTGTGTTCCAGCCTGGGTGACAGAGCCAGACTTCATCTCAAAAAAAAAAAAAAAATTAAGAGCTCCAAATTTATTGTTATTAAACCCTCATATCAAACTTTAAAATTGTTTAATTCTAATTATAAAAGTAATAAGTGTGTTATGGAAAAATTGAAAAATATAGAAGAGCACATAGAGAAAAAATCACCACTAATTCTACCACCCACATAATAGAAAATCACTTTTCACATATTCTCTCGCAGTCTTTATATACATATTTTTTGGGGGAAGAAGCAACTTAATATTTACTGTTCGCACAAAAAAAAAATGGAATTCTTCTCCTAACAACAAAATGAATTTAAAACTTCTTTCTTATCTATTTCGGTATCTGATATAGTATCACAGCTATCCCTAAGTCTCTAGTTACCCTCACCCCAAAATCAACCTAGGCTACCTGTTGACCCTTTTGTATTTTTCTGTCTATGCTATATTTTAACATAGATGAAATCATGTTATATGTACAATTTTGAATTCTGATTTTTTAACTTTATATGAGCTTTTTCCCATGTCATTAAAAGTTTTTTAGATAAAGCTCTTTTTTGTCTGTTTTGATTTGGAGTCTCGCTCTGTCACCTAGGCTGGAGTGCAGTGGCGCCATCTTGGTTCACTGCAGCCTCCACCTTCCGGGTTTAAGCAATTCTCATGTCTCAGCCTTCAAGTAGCTGGGACTACAGTTGCGTGCCACCACGTCTGGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGCTCTCGAACTCCTGACCTCAAGCAGTTCTCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGTCCTCTTTTTTTTTTTTTAATCATGAAATATTTCAAATGCCTGGAAAACTTTGCTATCTTCAACGTATTCTAGAACCTCTTATTTTTGTATACTATAGAAATCCCGGCTCGGCGCCGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGACAGGCAAATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACCGTGAAACCCTGTCTTTACTAAAAATACAAAAGAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCATGAACTCGGGAGGCAGAGCTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGGAACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAATCCCTCCTAATTTCCTTCTTTTTAATCTCTACAG
Seq C2 exon
AACAAGGGTCAAAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTAACAAATACCATTGAAGAGAATTTTCCTCTGGGGACTGTGCAGTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCACCAAGAGAAATCGTGGCTCACATCATCCAGAAAATCTTGCTCAGTGGCTCTGAGACTGTGGATGTCCTAAAGGAGGCCTACATGCTTCTCATGAAAATTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170085:ENST00000443967:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=NA C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains