HsaINT0153475 @ hg19
Intron Retention
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27459977-27462278:-
Coord C1 exon
chr3:27462191-27462278
Coord A exon
chr3:27460124-27462190
Coord C2 exon
chr3:27459977-27460123
Length
2067 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATC
5' ss Score
7.05
3' ss Seq
TCAATATTTTTTTCACTTAGATT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTTTTTGTTTTTGTTATTGGGTCCAGCGGGCAAGGCACCACAGTACCATGAAATTGGACGATCAATAGCCACTCTCATGACAGATGAG
Seq A exon
GTAATCAGAATACTCCAAGTCTCTTTGAAGTAGACACTAATTATGCAGCATATAGTATATATTAGATTACAGTTCTCTTTTCTTTCATAGTGAAGCTCTAAAACTTTTCCTTGCTGTGTATACTGTTTTATCTCATATTTGCTTCTCCTATTTGCCTTCGGTTAGGTTTTTAAGACCTTTATATCAAGATCAGTGGGTATTTAAAAATTTTTTTTTGTTTTAAACATTTGTAATTATTGACTACCTTCTTGAACTTTCGAAATTTTGGGATTTTTTTTATCCTAGATTTCAGCATATCATTTCTCTAGGTTTTCCTCAGAACATTTTTTTTCCTGTAAATTTCTCTGATATGGGGTCCCGATCTTTGACGATAACCTACATACTAATCAGGACCTTGTCTTTCTTTTGAAGAGAGATTTGTAATCAGATTCTTGCCAAACATCAGTGCTGTGTGTCCCAAGGGTATTTGAAATGCCCCATATCTGAACCTGACCTAATTTTTCTTTTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCACCCCACCATGCCCAGCTAATTTTTCTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGGCCAGGATGGTCTCAATCTCCTGACCTTGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGTCACATTTTTCTGTCCTCTTTCAACCAGCCAGTCACCAGATTCTTTTTACCTCTTCAATGTGTTTTGCATTTAATCTGTCATATTCTTTCCATCTCTACTGCCATTTCTCTGGCTTAGCCTTTTATTTGTTGATTCAAGTAGCCTTTATGAGTATTTATTGTATAGTATTTTTCTCTACACTCTCAGTAACATGCAAATTTGAATGTATCATTTCCTTAGTCCAAAGATATTAATGACTTCCTATCATATAGTGAAATTTAAATTTAAACTTTTGGCCGGGCGCAGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACTTGAGGTCGGGAGTTTGAGACCAGCCTGGCCTACGTGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCACAGTTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCATACGCCACCACACCTGGCTAATTTTGTAGTTTTAGTAGAGATGGGGTGTCACCATGTTGGCAAGGCTGGTCTCAAACTCCTGACATCAGGCGATCCGCCTGCCTCGGCCTCCCAAAGTGCGGGAATTACAGGCATGAGCCACCGTGCCTGGTCAGTTACCTCCTTTAAGAGAATTTTCCTGGCTCCTTTGTTCTTTCCCATCAGTTTCCCTTTCTGTACCCTACTTTCTTTTTATCAGAGCGTCTATCAATACCTATAATTATTTATTTATTTAATAACGCGTTTCACTGTTTTTCCTCCTAGAAAAAAAGGTTCTTGAGTATAGGGACCTTGCCTTACCTGTCACCATTGCATTATCCACAATGCTTAGAATTGTATTTTAGCAGTTAGTAGGTAGCCAGTAAATATTGGTCATTAAATAAATTATTTAAGTAAAGTTGTTTGCATATCCATGATTATTTTCTTAGGATAAATGACATTTAAATGTCATAGAAGTAGAATGACACGCTACAGTGTTTTATTTTCTAATCAATTACTATTTCCCAGGCAAAATTTTATTTTTAAAAAATTGTTCTGTCTTAACATGTAACTGTTCTCTTTCATTGTTTGTTATTGTTAATTCATCTGATAATACTGAGTGGATTACCTTTTATAGTTGTTACCCAGGCTGGGCTGAATACCTGCCTGAGATAAGAGTTTAGGGGTTATCTTTATTGTGAAGCTATTTATGATATCCAGAGTGGATTTACTATGTGTAGAAATTTTTTTCAACTTTAAAATCTTTTACTCAATATTTTTTTCACTTAG
Seq C2 exon
ATTTTCCATGATGTAGCTTATAAAGCAAAAGACAGAAATGACCTCTTATCTGGAATTGATGAATTTTTAGATCAAGTAACTGTCCTACCTCCAGGAGAGTGGGATCCTTCTATACGCATAGAACCACCAAAAAGTGTCCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-SLC4A7:NM_003615:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(36.7=100)
A:
NA
C2:
PF075658=Band_3_cyto=PD(45.6=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)