HsaINT0154479 @ hg19
Intron Retention
Gene
ENSG00000187122 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:11085]
Coordinates
chr10:98794228-98797523:-
Coord C1 exon
chr10:98797455-98797523
Coord A exon
chr10:98794300-98797454
Coord C2 exon
chr10:98794228-98794299
Length
3155 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
3' ss Seq
GATGCCTTTGCCTTTTCCAGGGA
3' ss Score
9.7
Exon sequences
Seq C1 exon
CTATTTGGACGGGAACCAGTTCACGCTGGTTCCGGGACAGCTGTCTACCTTCAAGTACCTGCAGCTCGT
Seq A exon
GTAAGTATCCAGGCCGCTTGAGGACAGGAGGGCCTTTGGCATCTAACCATCAGGACTCCGGCTTTCCTGGAATTTCCTACGGACCTCACTTCTGGGCAGATCCTGCTTCTTTTCCTTTCCCTGCTCCCCTCTGGGAACAGCTGTGCCTAGAGCTGTTTTGCCACCTAGTGGCCACGATTGGCAATTACATAGTTCCAGGCCATGTTGGGTTGGACCTGCCTCCTCCTCCTGCCCACGCCGTCTCCCCAAAGCTCCCCCGTGAGGCTGGTCGTGACTGTTAAAAGGGTTATCCTGGTCGGGCGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGACGGATAACCTCTCGAACTCATGTTGGAGTTCGAGACCAGCCTGATCAACATGGAGAAACCCCATCTTTCCTAAAAATACAAAATTAGCCGGGCATGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGTAGGAGAATCGCTTGAACCCGGGAGGTGGAGGCTGCAGTGAGCCAAGATCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCACACACACACACATACACACACACACACACACACACACACACACACACACACACACACACACACAAAGGGGGTTATTCTTGCAAGGTTAGGAGCCAAGGAGCCAGGAAAAGTGGAGGGTGATGGAAAGCTTCTCGGTCCAGCTCAGCTCTCAAACCAAGTATGAACTATGGCAGCTACAAATACATACCTGTAACTAAGTTTTTCTTCAGGCTACGCCTCTGCTTTTCTATTATTTCCACCTTTGACCCCTTCTACTCCATGAAAATATACAAAATAAGCCTCAGGATAATAAGTTCAGCTCCTTTTAGTTTTCTAGCCTACCTAGCTCCTCACTTCAATTGTCTTTATCTGCTCCTTGGCCAGATTCTACCAAAAAGAAGTCCAGAGAACATTCCACCTTAGTGTGATTTGGAGCAGTCCCACTCCAAGTGCAATCTACGGGCCCACATCAGTCCCAGAACTGTTTGTAATGGGTTTGTAATTAGATATGGCGCTTACACCAGAATCTAAATCAATGTATTGCTTCCTTTGTTGAGAAAGTCTTGCTATGGAAACAATGTTCGCGTAAACTAAGCTAGGTGTGGTGACCGGATCTTGGCCCAAGTTTCTTATTGTGGGTTGGTGAAATTTAGTTCAAGGACTGGCTACTTTGGGCGGCTCTGGCTTACAGAATTTTGAAGCTCCAATTTATCTGTCTTTGCTTAATGACCTGGCCAATGTGTGTTGAATGTTCCAATGGGAGGGGTGGAGAAGGGATGGAGTAGTGTGATTCAGTGGCTGGTGTCAGAGTGCTTTGAGCCAGTGAAACTGCCTCTTGGGGGCTGAAGTACCACCACCTCCTCATCACAGGGGAGGACCACAAAGTGTGTTGAACATTCAGTAGAGCACTTAAATGTATCTCCAAAGACAGTGGAATGATTTAGAATTAGATTAGAGGAACGTTCAGGAGGAGAAGATGAAGGCACGGCACATCGTTGCATTTTCTAAATGTTTCCTGAGCTGAGAGCGCATGAAGTGGGCAGACGTGAAGGCCCCGAAGTCATGGCCCCCTCTCCAGACTGTCATGGTTTAGGGAGGATGCAGGGGAGGGGAGGGAGCGCATAAAGTCGTGTGGGTGATAAGGGTTCCAACAGAGGTCAATGCTGATTAGGGCTGTGGCTCAAGGAGGATGTGATCAACTCAGGGAGGCGGCTTGCGGGGAGGGCATCTTGGAACACGAGCTGGAGTTCATTGGTGGGCAGAGGGAATAAGCTGTCTGGGGCCACAGAGTGTAGTCTGCTCAGAGAACTTCAAGAAGCTTAGTGAATCCTAAGCCTGGGAAGTCTTCGGAGCAGGGAGCAGAGGGAGGGAGGGGCAGGGGCTAGACCCAGGAGTGCCGACAGGTGGCCAGCTAGAGGGCCTGGAGTCCACATGCTAGGCACATGGGTGCCACTGTGGGGTTTCGTCAGCTTTGTGTCATAGAGAAATTGCTCTGGTGCCACCCTCATGGCAGATGGATCAAAAGGGGCAAAGCAGTGGGTGAGAGATGAGGTCAGAATCCCAGGCAGGAGCCAGAGAGAGAGGACGCTGGCTCAGGAGGAGGGCACGGTGCGAGAGGTGACCAGGGCCACCAGCCAGGGGCGGATCAGATGGGTGGGATGAGAGGGCAGATGTGTGGGCAGGCAGCATTATGGAGCTGGAGCCTGGGGGATGGGGCGTGGTAGGGAGAACAAGATGCGGGCGGAGTTTGAGTATCTGTGGGCATCAGGAGGAGGAGTTCATGAGAGGACAGGCTGGGGCCATGGGGAGGGGGGCACTGTCAGCACAGGGGCGTCCCCGAGGGCACCCAGATTGGACTAAACAGGGCACAGATGGGCTTTAGCAATCCCCATGCCTCTGGGCTGAGTACAAAGGAAGCTTCTACCAGAGACTGAGGAGGCACAGCCAAAGGCCCCCAAAGACAGTCGGGAGCGGAGGAAAGCGGGTGGCGGGAGTTTTGAGAAGAGAAGAGAGATCAGTTGTGTCAGATGCCACAGGTGACTCGGAGAGGCCATGGCAGCAACCTGGGCTTGTGGCCAGTGGACCGGCTTTGAATCTGGCTCTGCCTCCGACCAGCTGGTGACCCTTCAAGAGTCATGGATCCCTCTGAGACTCTGGGTCTTTGTCAAATGGGGCTGCCCTCTCCCTCATAGGACTGCCTCGTAGGGAGGGCTTCTGAACGAGCCCACCTAAGGTGCTGGCAGGAGAGAAAGGAGAGAGTGCTGGATCTGGTCGGGAGGCCACCAACACCCTGGTGGGAGTGTTCCCATGGTAAAAAGGGGCAGAGCCAGGCTCTGCTTGCAGAGGGATGGGGGTGAGGGTCAGGAAATGGAGGCACCAAGCCCTGGTACCTGAGGGAGTTGAGGGAGCAGCGCAGCACTGTAGCTAAGCAAGCGCTGAGACCCGAGGCTGTGCACCAGGGCTCCTCTCCACCCCTGGCCAACCTGGCTGGGGAATGGCCCTGGGCAGAGTGAGGGAGGGGAAGAAGCCCGTGAATGTGAGCCAGGGCTGAGTGAGTTCTTTCTAAATCATGATGCCTTTGCCTTTTCCAG
Seq C2 exon
GGACCTGAGCAACAACAAGATCAGTTCCTTAAGCAATTCCTCCTTCACCAACATGAGCCAGCTGACCACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-SLIT1:NM_003061:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.8)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)