GgaINT0041615 @ galGal3
Intron Retention
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23836672-23837249:+
Coord C1 exon
chr6:23836672-23836740
Coord A exon
chr6:23836741-23837200
Coord C2 exon
chr6:23837201-23837249
Length
460 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
3' ss Seq
TGCCTCCTTCCTTTGCACAGGAT
3' ss Score
9.17
Exon sequences
Seq C1 exon
CTACCTGGATGGAAACCAGTTCACCCAGGTGCCGGGTCAGCTCTCCACCTTCAAGTACCTGCAGCTGGT
Seq A exon
GTAAGTGGCTGAGAGCAGAGCTCACCACTGGGACCTGAGGGTGGCAGTGTGGGCTGTTCCCATGGTGAGCCCTCCCCAGGAGGGACCCCTGCAGAGCCCTTTGTGTGGGCTCATGGCTGGCTGGCAGTGTGTCCCTGTGCCCCTCTGGGTGTGCAGCGAGAAGGGACAGGAGCGGCCGCAGCCCCTGGGTCTGTGTTTTGCAGCGATCTGAGCAACAACAGGATCAGCTCACTGAGCAACTCCTCCTTCACCAACATGAGCCAGCTCACCACCCTGTAAGTGCGGGCACTGGGCTGCAGGCTGCCCTGCCTGAGGGAGGGTGTTCCCAGGGGACACCAAAGACCGGGGGACCTTCCATCTGAGTGAAGCTGTGCCCTGAGCTGATGTGGGGGGTAGGACACGGGGGGGGCAGTGCGCGGCTCGGGGTGGCCTCTCTGTGTTGCCTCCTTCCTTTGCACAG
Seq C2 exon
GATCCTCAGCTACAACTCCCTGCAGTGCATCCCTCCACTGGCCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622:ENSGALT00000012327:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(53.5=100)
A:
NA
C2:
PF127992=LRR_4=PD(32.6=82.4)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]