BtaINT0137035 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043991 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr26:18168118-18170143:-
Coord C1 exon
chr26:18170072-18170143
Coord A exon
chr26:18168190-18170071
Coord C2 exon
chr26:18168118-18168189
Length
1882 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
CTCTCTCTTCCTTCCCCCAGGAT
3' ss Score
12.88
Exon sequences
Seq C1 exon
GGACCTGAGTAACAACAAGATCAGTTCCTTAAGCAATTCGTCCTTTACCAACATGAGCCAGCTGACCACTCT
Seq A exon
GTGAGTCCCGCCGGGAGGAGGGAGGGCTCATGGTTACTGGGACTCTCCCCAAGCCTCGGTCATGAGCAGGTGTCCCCACATAGCCTCCTCAGCCTCCAGGGAGGGTGCCAGGGCCTGCCAGCCAAAAAGACTTTTCAGAAACATTCTTTTTATTGTGAAATGCAGCATATATATGGAAAACTGCGAAAAACATAAACATATAGTTTAACAAACAGTCATAAAACTAGCACATGTATAAATACCTAAGGCAAAAACTAGAACACAGCTAGCACCCCAAGAATTCCCCTGTGCCTTCCTGAGGCAGTCCCTACTCAGACTTGTACAATGATCTCTTCCTTGGTCTTTATATTGCCATCTACATATGTATTTCTACACAGTGAAGTTTAATTTTGCCCATTTTTGAGCCTTATATAAATTGAATCATATAGGATATATAGTCTTTTATGTCTGTCTTCTTTTATTTTCCATTGTGTCTGTGTGAAGCTGTGGTCTCTTCATTTTCATTGCTATACAGTATTCCTTTGTAGGAATATGCCACATTTTGCTCATCCATTCTACTATTGATGGATATTTGGGTTGTTTCCAGTTTGGACTGTTGTGAATGGTGACTCTGAACATTTTGGTGCCTATGTTCTAAGATATTTTAATGATTGCTTTACTTATATTCCAAGCAATTGGTTGGAAAGTAGTAATAAGCATCGCTTATATTTGCCTGCTTAAGAATTGTATTTTGTTCACCTTCCCAACACCTCATTTTACAGATGATGTGCCAAGAACTTAAGAACTTTCCCTTAGGTCCTACTGTGGTCAAATAGCAGAGCCAGTATCCCAAAAGACAGGTTCCTGACCCAGGCAGGCCCCCAGGAACAAAATGTGGGCCTGAGGCCATGGAACACTGCACTTTCCTGCCCTGGGTTCCCACTTCAAAGTCTTCATGAGCCTATTGACTGAAAGAAAAATACATAACATAAAAGTTGAGTTAAGCCTGGAGACAGCCTCTCAGATAGGTCTGAGGAACTGCTCTGAAGAGGTAAGGGAGGAGCCAGGATACAGAGGAACATTTTTATGAGAAAAACATGTAGTCACACATCAAAAGGTTACTGCTAATCACAAAGAACATATCTCAGGTGAATGACTTTAGTGCTCTTCTGCCTATGCGAGGATGCAAGAGTCTGGGGTCATTTGAATTTTTTTCCTTAGATTTGCATGTTAACTCTCTAAAGGCCAGTATATTCAATGCACAGAATATTTTCTTTCTCCTTTCTGAATTCCCCGCAGGGTGCACCGTCAGTAATGGCTTGATCCTTGTGGAACTGGATTAGCAGGCAATTTTTTTTCTTTATGAGCCTGTGTGTGAAGCTGCCATGGCCTGTGGCAGTGACTCTCAACCAGGGGCAGCTCTGCCCACCAGGGAGCACTTGGGAATAGTTGAGAACTTCTGGCTGTCACAGCTGGCGGAGGGCAGGGGGAACCCCTGGCATTTCATCGTCAGAGGCCAGAGATGCTGCTCAGCACCCCTACAGCACACACAGGGCAGCCCCCCTCCCACCCAACAAGGAATGGTCAACAGTGCTGAGGCTGAGAAATCCTGGGCTAGGCGATCCTGGCAGCTGTAAGGAGGAATAACCCTTTCCTGTGATAAAAATGTCTCATTTCTCTTGTTATTATTTTAAAAATAGCTCTAGTGAAGTATTATTAATATCTAATAGTGTATCCTTAAAGTGTAAAAGTTGACACATTTTGATTTATGTTCATGCCCATGGAATCATCACCACAGTCAAGATGGTGGCCATCTGCGTCAGCACCGGAAGTGCACCCCTTAATAACTCTTCCCCCTTCCTCCCTCCCTTTCCCCCACCCTCCTCTCTCTTCCTTCCCCCAG
Seq C2 exon
GATCCTCAGCTACAACTCCCTGCAGTGTATCCCTCCTCTGGCCTTCCAGGGGCTTCGCTCCCTGCGCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043991:ENSBTAT00000061296:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]